View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_low_20 (Length: 239)
Name: NF8479_1D_low_20
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 37204606 - 37204370
Alignment:
| Q |
3 |
aaccaatgagatggacatcatgttacatcagaatcctgtgaaatatttgacaaatgcttcactgtaacatatccctctctcagttttggaccatactctt |
102 |
Q |
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| T |
37204606 |
aaccaatgaaatggaaagcatgttacatcagaatcctgtgaaatatttgacaaatgcttcactgtaacatatccctctctcagttttggaccatactctt |
37204507 |
T |
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| Q |
103 |
gtaaaaatgatagcttggagacctccaaaaacttgcagacctataatccaaaggcttattttagctccgtagaagacacatttacatacacagtactgga |
202 |
Q |
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| T |
37204506 |
gtaaaaatgatagcttggagacctccaaaaacttgcagacctataatccaaaggcttattttagctccgtagaagacacatttacatacacagtactgga |
37204407 |
T |
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| Q |
203 |
gaatcatataagaaatctgtgtatctaaacaaatcat |
239 |
Q |
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| T |
37204406 |
gaatcatataagaaatctgtgtatctaaacaaatcat |
37204370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 37218041 - 37217997
Alignment:
| Q |
71 |
atatccctctctcagttttggaccatactcttgtaaaaatgatag |
115 |
Q |
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| T |
37218041 |
atatccctctctcaggtttggaccatactcttgtaaaaaagatag |
37217997 |
T |
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