View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_1D_low_28 (Length: 206)

Name: NF8479_1D_low_28
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_1D_low_28
NF8479_1D_low_28
[»] chr7 (1 HSPs)
chr7 (15-202)||(2837592-2837779)
[»] chr8 (4 HSPs)
chr8 (25-146)||(29669767-29669888)
chr8 (58-145)||(21400656-21400743)
chr8 (58-145)||(21795149-21795236)
chr8 (79-146)||(10364427-10364494)
[»] chr2 (2 HSPs)
chr2 (25-117)||(19989825-19989917)
chr2 (42-143)||(36340544-36340645)
[»] chr3 (3 HSPs)
chr3 (42-146)||(27208182-27208286)
chr3 (25-118)||(30931553-30931646)
chr3 (42-92)||(8119016-8119066)
[»] chr6 (3 HSPs)
chr6 (25-143)||(20211675-20211793)
chr6 (25-143)||(22105698-22105816)
chr6 (26-82)||(20438396-20438452)
[»] chr1 (2 HSPs)
chr1 (25-118)||(23942337-23942430)
chr1 (25-92)||(25232624-25232691)
[»] chr5 (2 HSPs)
chr5 (31-122)||(20520203-20520294)
chr5 (25-143)||(20885418-20885536)
[»] chr4 (2 HSPs)
chr4 (33-146)||(6597161-6597274)
chr4 (31-91)||(40714261-40714321)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 2837592 - 2837779
Alignment:
Q  15 ttctaagtgttggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcat 114  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2837592 ttctaagtgttggagaagtggaatgacattcaaaaacgtctctaaagagtcccttacaaaatgaaactccacatcaaaaaagtgatgcatcaactagcat 2837691  T
Q  115 ttccataacatacaatattgtctccacctccatgataacttgaaatgtttcattcccctgatttttactacgaaatgactctttcttg 202  Q
     ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2837692 atccataagatacaatgttgtctccacctccatgataacttgaaatgtttcattccccttatttttactacgaaatgactctttcttg 2837779  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 29669767 - 29669888
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataaca 124  Q
    ||||| ||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| | ||||||||| ||||||| |||||  || |    
T  29669767 tggaggagtagaatgacattcaagaatgtctcaaaaaaatcccttacaaaatgaaactccacatcaaagaggtgatgcattaactagcgtttccggaata 29669866  T
Q  125 tacaatattgtctccacctcca 146  Q
     | ||| |||||||||||||||    
T  29669867 caaaatgttgtctccacctcca 29669888  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 21400743 - 21400656
Alignment:
Q  58 aaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataacatacaatattgtctccacctcc 145  Q
    |||| |||||||| ||||||||||| ||||| ||| | ||||||||||||||  |||||| |||| | | ||| ||||||||||||||    
T  21400743 aaaaggtcccttacaaaatgaaacttcacataaaagaggtgatgcatcaactgtcatttctataagacataatgttgtctccacctcc 21400656  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 21795236 - 21795149
Alignment:
Q  58 aaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataacatacaatattgtctccacctcc 145  Q
    |||| |||||||| ||||||||||| ||||| ||| | ||||||||||||||  |||||| |||| | | ||| ||||||||||||||    
T  21795236 aaaaggtcccttacaaaatgaaacttcacataaaagaggtgatgcatcaactgtcatttctataagacataatgttgtctccacctcc 21795149  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 10364427 - 10364494
Alignment:
Q  79 aactccacatcaaaaaagtgatgcatcaactagcatttccataacatacaatattgtctccacctcca 146  Q
    |||||||||||||| | ||||||| ||| |||||||||| | || | ||||| |||||||||||||||    
T  10364427 aactccacatcaaagaggtgatgcgtcagctagcatttctagaagacacaatgttgtctccacctcca 10364494  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 19989825 - 19989917
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttc 117  Q
    ||||| ||||||||| ||||||||||  |||| ||||||||| ||| ||||||||||||||||||||| | ||||||| ||||||||||||||    
T  19989825 tggaggagtggaatggcattcaagaacatctcaaaaaagtcctttacaaaatgaaactccacatcaaagaggtgatgcgtcaactagcatttc 19989917  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 36340544 - 36340645
Alignment:
Q  42 attcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataacatacaatattgtctccac 141  Q
    |||||| || ||||| ||||| || |||| ||||||||||| ||||| ||| | |||||| || |||||||||||| | || | ||||| ||||||| ||    
T  36340544 attcaataacgtctcaaaaaaatctcttacaaaatgaaacttcacattaaagaggtgatgtattaactagcatttctacaagacacaatgttgtctctac 36340643  T
Q  142 ct 143  Q
    ||    
T  36340644 ct 36340645  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 27208182 - 27208286
Alignment:
Q  42 attcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataacatacaatattgtctccac 141  Q
    ||||||||| ||||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||  ||||||  || || | ||||| ||||||||||    
T  27208182 attcaagaacgtctcaaaaaagtctcttataaaatgaaatttcacatcaaagaagtgatgcatcaatcagcattcacagaagacacaatgttgtctccac 27208281  T
Q  142 ctcca 146  Q
    |||||    
T  27208282 ctcca 27208286  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 30931646 - 30931553
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttcc 118  Q
    ||||| ||||||||| ||||||||||  |||| | |||  |||||| || |||||||||||||||||| |  |||||| |||| ||||||||||    
T  30931646 tggaggagtggaatggcattcaagaacttctcaagaaaagcccttacaatatgaaactccacatcaaagagatgatgcgtcaaatagcatttcc 30931553  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 8119016 - 8119066
Alignment:
Q  42 attcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaa 92  Q
    ||||| ||||||||||||| |||||||||| |||||||||| || ||||||    
T  8119016 attcaggaatgtctctaaagagtcccttatcaaatgaaactacaaatcaaa 8119066  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 20211675 - 20211793
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataaca 124  Q
    ||||| ||||||||||| || ||||||||||| |||||  |||||| ||||||||||| ||||||||| | ||||||  |||||||||||||||  || |    
T  20211675 tggaggagtggaatgactttaaagaatgtctcaaaaaatccccttaaaaaatgaaacttcacatcaaataggtgatgtgtcaactagcatttccggaaaa 20211774  T
Q  125 tacaatattgtctccacct 143  Q
     ||||| ||||| ||||||    
T  20211775 cacaatgttgtccccacct 20211793  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 22105698 - 22105816
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataaca 124  Q
    ||||| ||||||||||| || ||||||||||| |||||  |||||| ||||||||||| ||||||||| | ||||||  |||||||||||||||  || |    
T  22105698 tggaggagtggaatgactttaaagaatgtctcaaaaaatccccttaaaaaatgaaacttcacatcaaataggtgatgtgtcaactagcatttccggaaaa 22105797  T
Q  125 tacaatattgtctccacct 143  Q
     ||||| ||||| ||||||    
T  22105798 cacaatgttgtccccacct 22105816  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 20438396 - 20438452
Alignment:
Q  26 ggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaact 82  Q
    |||| |||||||||  ||| ||||||||||| | |||||||||||| ||||||||||    
T  20438396 ggaggagtggaatggtattgaagaatgtctccagaaagtcccttatcaaatgaaact 20438452  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 23942337 - 23942430
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttcc 118  Q
    ||||| ||||||||||||||||||||  |||| | |||  |||||| || |||||||||||||||||| |  ||||||||||| ||||||||||    
T  23942337 tggaggagtggaatgacattcaagaacttctcaagaaaagcccttacaatatgaaactccacatcaaagagatgatgcatcaaatagcatttcc 23942430  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 25232624 - 25232691
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaa 92  Q
    ||||| |||||||||| ||||||||| ||||| | |||||||||||| ||||||| || || ||||||    
T  25232624 tggaggagtggaatgatattcaagaacgtctcaagaaagtcccttatcaaatgaagctacaaatcaaa 25232691  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 20520294 - 20520203
Alignment:
Q  31 agtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataa 122  Q
    |||||||||  |||||||||  ||| |||||||| ||||| ||||||||||| || |||||| |  |||||| |||||||||||||||||||    
T  20520294 agtggaatggtattcaagaacatctttaaaaagttccttacaaaatgaaactacatatcaaagagatgatgcgtcaactagcatttccataa 20520203  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 20885536 - 20885418
Alignment:
Q  25 tggagaagtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataaca 124  Q
    ||||| ||||||||||||||||||||  |||| | |||  |||||| || |||||||||||||||||| |  |||||| |||| || |||||||  ||      
T  20885536 tggaggagtggaatgacattcaagaacttctcaagaaaagcccttacaatatgaaactccacatcaaagagatgatgcgtcaaatatcatttccggaaac 20885437  T
Q  125 tacaatattgtctccacct 143  Q
     ||||| ||||||||||||    
T  20885436 cacaatcttgtctccacct 20885418  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 6597274 - 6597161
Alignment:
Q  33 tggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaaaaaagtgatgcatcaactagcatttccataacatacaatat 132  Q
    ||||||| |||||||||| ||||| ||| || | |||| || |||||||| ||||| ||| | |||||||  | ||||| ||||||  || | ||||| |    
T  6597274 tggaatgccattcaagaacgtctcaaaagagcctcttacaagatgaaactacacattaaagaggtgatgctccgactaggatttcctgaagacacaatgt 6597175  T
Q  133 tgtctccacctcca 146  Q
    ||||||||||||||    
T  6597174 tgtctccacctcca 6597161  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 40714261 - 40714321
Alignment:
Q  31 agtggaatgacattcaagaatgtctctaaaaagtcccttataaaatgaaactccacatcaa 91  Q
    |||||||||||||| ||||| | ||| ||||||||||||| ||| | ||||| ||||||||    
T  40714261 agtggaatgacatttaagaacgactcaaaaaagtcccttacaaattaaaactacacatcaa 40714321  T

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