View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_low_29 (Length: 204)
Name: NF8479_1D_low_29
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_low_29 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 19841132 - 19840933
Alignment:
| Q |
5 |
agtttggtgttggctacacaattagttggtgctattgtctataattatgacaattatgtacacagttgcctatcttttatctgttaatcgaacatgaacc |
104 |
Q |
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| T |
19841132 |
agtttggagttggctacacaattagtcggtgctattgtctataattatgacaattatgtacacagttgcctatcttttatctgttaatcgaacatgaacc |
19841033 |
T |
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| Q |
105 |
ctaatgaatttttctgttgattgagctctgaagcttatttttcttatgggatgaatctccattcttttgatctgtaatgtctaataccaatttatgctga |
204 |
Q |
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| T |
19841032 |
ctaatgaatttttctgttgattgagctctgaagcttatttttcttatgagatgaatctccattcttttgatctgtaatgtctaataccaatttatgctga |
19840933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 19958999 - 19958876
Alignment:
| Q |
74 |
ctatcttttatctgttaatcgaacatgaaccctaatgaatttttctgttgattgagctctgaagcttatttttcttatgggatgaatctccattcttttg |
173 |
Q |
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| T |
19958999 |
ctatcttttatcaattaatcaaacatgaactctaatgaatttttctctcaattgagctctgaagcttatttttcttatgagatgaatcttcattcctttc |
19958900 |
T |
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| Q |
174 |
atctgtaatgtctaataccaattt |
197 |
Q |
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| T |
19958899 |
atctgtgatttctaataccaattt |
19958876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 20030800 - 20030928
Alignment:
| Q |
61 |
tgtacacagttgcctatcttttatctgttaatcgaacatgaaccctaatgaatttttctgttgattgagctctgaagcttatttttcttatgggatgaat |
160 |
Q |
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| T |
20030800 |
tgtacacaattgactatcttttatcaattaatcaaacatgaactctaatgaatttttctctcgattgagct-tgaagcttatttttcttatgcgatgaat |
20030898 |
T |
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| Q |
161 |
ctccattcttttgatctgtaatgtctaata |
190 |
Q |
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| T |
20030899 |
cttcattcctttcatctgtgatttctaata |
20030928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 19851552 - 19851461
Alignment:
| Q |
113 |
tttttctgttgattgagctctgaagcttatttttcttatgggatgaatctccattcttttgatc-tgtaatgtctaataccaatttatgctg |
203 |
Q |
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| T |
19851552 |
tttttctcttgattgagctctaaagcttacttttcttctgagatgaatcttcatccctttgatcatgtgatttgtaataccaatttgtgctg |
19851461 |
T |
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