View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_1D_low_30 (Length: 201)

Name: NF8479_1D_low_30
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_1D_low_30
NF8479_1D_low_30
[»] chr1 (3 HSPs)
chr1 (1-78)||(45173882-45173959)
chr1 (106-179)||(45173956-45174029)
chr1 (55-123)||(48416813-48416881)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 45173882 - 45173959
Alignment:
Q  1 gctaccttaaacttaatcttaatataagaggttcaacttaatattaatcataatcttaatagaagatcattgccttaa 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173882 gctaccttaaacttaatcttaatataagaggttcaacttaatattaatcataatcttaatagaagatcattgccttaa 45173959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 45173956 - 45174029
Alignment:
Q  106 ttaagtttaagcaagtttaaaaaacttgtattaagacatgataagtcattacttaccactgaaagattgagttt 179  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173956 ttaagtttaagcaagtttaaaaaaattgtattaagacatgataagtcattacttaccactgaaagattgagttt 45174029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 48416881 - 48416813
Alignment:
Q  55 cttaatagaaga-tcattgccttaaacttgtcctttcataagcaaataagcattaagtttaagcaagttt 123  Q
    |||||||||||| ||||||||||| |||| || ||| |||||||||||||||| || || ||||||||||    
T  48416881 cttaatagaagagtcattgccttatacttatcttttgataagcaaataagcatgaa-ttcaagcaagttt 48416813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University