View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_low_4 (Length: 458)
Name: NF8479_1D_low_4
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 24494412 - 24494766
Alignment:
| Q |
10 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgcagcagatagtacggaatacagaag |
109 |
Q |
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| T |
24494412 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgtagcagatagtacggaatacagaag |
24494511 |
T |
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| Q |
110 |
cgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagcttgcacaattcatgcaacatccatcatctacacac |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494512 |
cgtcataggggctctacaatatttttccatgacaaggcctgacatagcctacactgtaaataagcttgcacaattcatgcaacatccatcatctacacac |
24494611 |
T |
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| Q |
210 |
tttacatccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagcacacttcttctcaaaatctttatgcattcagtg |
309 |
Q |
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| T |
24494612 |
tttacagccttgaaaagacttctttgatatctcaaagccaccatgtttcatggacttcacttgaagcacacttcttctcaaaatctttatgcattcagtg |
24494711 |
T |
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| Q |
310 |
atgccgattgggctggaaatagagatgattatacatccacctctgcacatgttac |
364 |
Q |
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| T |
24494712 |
atgccgattgggctggaaatagagatgattatacatccacctctgcacatgttac |
24494766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 93762 - 94116
Alignment:
| Q |
10 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgcagcagatagtacggaatacagaag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
93762 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgaagcagatagtacggaatacagaag |
93861 |
T |
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| Q |
110 |
cgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagcttgcacaattcatgcaacatccatcatctacacac |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
93862 |
cgtcataggggctctacaatatttgtccatgacaaggcctgacatagcctacactgtaaataagtttgcacagttcatgcaatatccatcatctacacac |
93961 |
T |
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| Q |
210 |
tttacatccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagcacacttcttctcaaaatctttatgcattcagtg |
309 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
93962 |
tttacaaccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagtgcacttcttctcaaaatctatatgcattcagtg |
94061 |
T |
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| Q |
310 |
atgccgattgggctggaaatagagatgattatacatccacctctgcacatgttac |
364 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
94062 |
atgccgattgggctggaaatcgagatgattatacatccacctctgcacatgttac |
94116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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