View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_low_5 (Length: 388)
Name: NF8479_1D_low_5
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 32 - 375
Target Start/End: Original strand, 22684545 - 22684888
Alignment:
| Q |
32 |
tttcatcagaagtgtaagtgcaatagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataa |
131 |
Q |
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| T |
22684545 |
tttcatcagaagtgtaagtgcaacagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataa |
22684644 |
T |
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| Q |
132 |
acttgaaaacactaaagttgttctgataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggc |
231 |
Q |
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| T |
22684645 |
acttgaaaacactaaagttgttttaataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggc |
22684744 |
T |
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| Q |
232 |
aataatattaaggcaatttttgccaaaggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaa |
331 |
Q |
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| T |
22684745 |
aataatattaaggcaaattttgccaaaggagtcacaacctataaataaaacaaaacacagaaatttgttaaaatgtgtcatctatgtgataaaacatgaa |
22684844 |
T |
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| Q |
332 |
tttaaagtcaagaaaaaaggaacaaggagattaattttgttttc |
375 |
Q |
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| T |
22684845 |
tttaaagtcaagaaaaaaggaacaaggagattaattttgatttc |
22684888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 58 - 338
Target Start/End: Original strand, 22695870 - 22696146
Alignment:
| Q |
58 |
agcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaacttgaaaacactaaagttgttctga |
157 |
Q |
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| T |
22695870 |
agcaatgcacaaaggtagtaataatggtatg-acaaaacttaccaaaatatggaaaagagagggccacaactaaacttgaaaccactaaagctgttctga |
22695968 |
T |
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| Q |
158 |
taaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaataatattaaggcaatttttgccaa |
257 |
Q |
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| T |
22695969 |
tgagaatagacataggataacatcttagcctaggagaagggac---aagttcctctatgcttgatgcaataggcaataatgttaaggcatattttgccag |
22696065 |
T |
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| Q |
258 |
aggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaatttaaag |
338 |
Q |
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| T |
22696066 |
aggagtcacaacctatatgtaaaataaaacacagaaatttgttaaaatttgtcatctatgtgataaaacatgaatttaaag |
22696146 |
T |
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