View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_high_11 (Length: 441)
Name: NF8479_2D_high_11
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_11 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 4947006 - 4947436
Alignment:
| Q |
1 |
agacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattgtttgaaaagtaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947006 |
agacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattgtttgaaaagtaaac |
4947105 |
T |
|
| Q |
101 |
aatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttcttttaagtcaattgtctccttagccgccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4947106 |
aatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttcttttaagtcaattgtctccttagccaccttt |
4947205 |
T |
|
| Q |
201 |
ggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataaatnnnnnnntccttggttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
4947206 |
ggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataaataaaaaaatcattggttaa |
4947305 |
T |
|
| Q |
301 |
aaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaatctgatggcaaagtaacaatagtatcatttccttgctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
4947306 |
aaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaataaaatggcaaagtaacaatagcatcatttccttgctt |
4947405 |
T |
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| Q |
401 |
gcccacagtttgcaaatagcaacaccatact |
431 |
Q |
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| T |
4947406 |
gcccacagtttgcaaatagcaacatcatact |
4947436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 3 - 420
Target Start/End: Original strand, 11680 - 12098
Alignment:
| Q |
3 |
acacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattgtttgaaaagtaaacaa |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
11680 |
acacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatggtgtgctatgtgattgtttgaaaagtaaacca |
11779 |
T |
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| Q |
103 |
tggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttc-ttttaagtcaattgtctccttagccgcctttg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
11780 |
tggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctgcctttg |
11879 |
T |
|
| Q |
202 |
gttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataaat-nnnnnnntccttggttaa |
300 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||| | |||||||||||| ||||||||||| |
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| T |
11880 |
gttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaataaataaaatccttggttaa |
11979 |
T |
|
| Q |
301 |
aaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaatctgatggcaaagtaacaatagtatcatttccttgctt |
400 |
Q |
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|||||||||||| ||| || |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
11980 |
aaatttcaacaaaaacttgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaacactagt-tcatttccttgctt |
12078 |
T |
|
| Q |
401 |
gcccacagtttgcaaatagc |
420 |
Q |
| |
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|||||||||||||||||||| |
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| T |
12079 |
gcccacagtttgcaaatagc |
12098 |
T |
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