View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_high_12 (Length: 436)
Name: NF8479_2D_high_12
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 7432766 - 7433163
Alignment:
| Q |
19 |
atgaaatttgacatggtttgtgatgagatggtcccaatattgaatattgatacagttatagtgctaagagaattgggttgaaatggatgagcatgtgagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7432766 |
atgaaatttgacatggtttgtgatgagatggtcccaatattgaatattgatacagttatagtgctaagagaattgggttgaaatggatgagcatgtgagt |
7432865 |
T |
|
| Q |
119 |
gaaatgatggtagataagaatttagatttaatagagttatagaccaacgagattattagattagattataggtttctttttaagtggatagttggcctct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7432866 |
gaaatgatggtagataagaatttagatttaatagagttatagaccaacgagattattagattagattataggtttctttttaagtggatagttggcctct |
7432965 |
T |
|
| Q |
219 |
cagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctttcttcaatacaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7432966 |
cagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctttcttcaatacaaag |
7433065 |
T |
|
| Q |
319 |
aaaattacaaaatatatgtgaagctttttaatttgattaattgcactccctctattttaactcgacttttattgataaagaattctctttttcatatg |
416 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7433066 |
aaaatgacaaaatatatgtgaagctttttaatttgattaattgcactccctctattttaactcgacttttattgataaagaattctctttttcatatg |
7433163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University