View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_2D_high_18 (Length: 367)

Name: NF8479_2D_high_18
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_2D_high_18
NF8479_2D_high_18
[»] chr6 (13 HSPs)
chr6 (33-355)||(18990231-18990551)
chr6 (72-355)||(20083212-20083495)
chr6 (72-355)||(22209684-22209967)
chr6 (72-355)||(20235183-20235466)
chr6 (72-355)||(22129167-22129450)
chr6 (74-355)||(18994860-18995141)
chr6 (72-350)||(18978935-18979194)
chr6 (197-355)||(22085459-22085617)
chr6 (197-355)||(22001400-22001558)
chr6 (188-355)||(21967121-21967288)
chr6 (197-355)||(21967576-21967734)
chr6 (33-75)||(18978814-18978856)
chr6 (33-75)||(22210046-22210088)
[»] scaffold0264 (1 HSPs)
scaffold0264 (72-355)||(14693-14976)
[»] scaffold0074 (1 HSPs)
scaffold0074 (74-355)||(50318-50599)
[»] scaffold0007 (1 HSPs)
scaffold0007 (74-355)||(7852-8133)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 33 - 355
Target Start/End: Original strand, 18990231 - 18990551
Alignment:
33 tccaacaatgcccgtacatgatacatattacaaatattcatttaataaa--ctatcgaggaataaaagt-acttgccgacatttgattgtttgaaaataa 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||  || |  |    ||||| | ||||||||||||||||||||||||||||||    
18990231 tccaacaatgcccgtacatgatacatataacaaatattcattttctaaatccttttca----taaaatttacttgccgacatttgattgtttgaaaataa 18990326  T
130 tgcagaactatgggcagattgagtagaactagattcttgtgcaagaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
18990327 tgcagaactatgggcagattgagtagaactagattcttgtgcaagaacgtttgaatccct-ctaccatgcaagaaaaacgcaggttctggtggagttggt 18990425  T
230 aattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcact 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
18990426 aattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcattttgaacacataatagaccaatctgaatgcact 18990525  T
330 taatgacttcatttgtagaataatct 355  Q
    ||||||||||||||||||||||||||    
18990526 taatgacttcatttgtagaataatct 18990551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 72 - 355
Target Start/End: Original strand, 20083212 - 20083495
Alignment:
72 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||    
20083212 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggtagattgagtagaacttgattcttgtgc 20083311  T
172 aagaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacg 271  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
20083312 aagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacg 20083411  T
272 atcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
20083412 atcgaaggtctggcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct 20083495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 355
Target Start/End: Complemental strand, 22209967 - 22209684
Alignment:
72 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| |||||| ||||    
22209967 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaattgtgcagaactattggcagattgagtagaacttgattctagtgc 22209868  T
172 aagaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacg 271  Q
    ||||||||  ||||  ||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||||||||||||||| |     
22209867 aagaacgtccgaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcgca 22209768  T
272 atcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||    
22209767 attgaaggtctagcatccgggtcattttgaacacataatagaccaatctgaatgtacttaattacttcatttgtagaataatct 22209684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 72 - 355
Target Start/End: Original strand, 20235183 - 20235466
Alignment:
72 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgc 171  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||| |||||||||||||||||| |||||||||||    
20235183 atttaataaactatagaggaataaaagtacttgcggacatttgattgtttgagaatagtgcagagctattggcagattgagtagaacttgattcttgtgc 20235282  T
172 aagaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacg 271  Q
    ||||| |||||||| | |||| ||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||| ||||||| |||||||  |    
20235283 aagaatgtttgaattctttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactgtcgag 20235382  T
272 atcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    || |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
20235383 attgaaggtctagcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct 20235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 72 - 355
Target Start/End: Original strand, 22129167 - 22129450
Alignment:
72 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgc 171  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||| |||||||||||||||||| |||||||||||    
22129167 atttaataaactatagaggaataaaagtacttgcggacatttgattgtttgagaatagtgcagagctattggcagattgagtagaacttgattcttgtgc 22129266  T
172 aagaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacg 271  Q
    ||||| |||||||| | |||| ||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||| ||||||| |||||||  |    
22129267 aagaatgtttgaattctttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactgtcgag 22129366  T
272 atcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    || |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
22129367 attgaaggtctagcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct 22129450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 74 - 355
Target Start/End: Original strand, 18994860 - 18995141
Alignment:
74 ttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgcaa 173  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||| | ||||||||| |||||||||||||||||| |||||| ||||||    
18994860 ttaataaactatcgaggaataaaagtacttgcagacatttgattgattgagaatagtacagaactattggcagattgagtagaacttgattctagtgcaa 18994959  T
174 gaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgat 273  Q
    ||||||  ||||  ||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
18994960 gaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaat 18995059  T
274 cgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
     ||||||||||||| |||||||||||||||||||||  ||||||||| |||||| |||||||||||||||| ||||||||||    
18995060 tgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgcagaataatct 18995141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 72 - 350
Target Start/End: Original strand, 18978935 - 18979194
Alignment:
72 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||                
18978935 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaact------------ 18979022  T
172 aagaacgtttgaatccgttctgccatgcaagaaaaa-cgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcac 270  Q
           |||||||  ||||| |||||||| ||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||||||||    
18979023 -------tttgaatatgttctaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcac 18979115  T
271 gatcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaat 350  Q
     |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
18979116 aatcgaaggtcta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaat 18979194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 22085459 - 22085617
Alignment:
197 tgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcat 296  Q
    |||| |||||| ||||||| | ||||||||||||| |||| || || | |||||||||||||||||| ||||| ||| ||||||||||| || |||||||    
22085459 tgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctgggtcat 22085558  T
297 tttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||    
22085559 tttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatct 22085617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 22001400 - 22001558
Alignment:
197 tgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcat 296  Q
    |||| |||||| ||||||| | |||||||| |||| |||| || || | |||||||||||||||||| ||||| ||| ||||||||||| || |||||||    
22001400 tgcaggaaaaatgcaggttgttgtggagttcgtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctgggtcat 22001499  T
297 tttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||    
22001500 tttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatct 22001558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 188 - 355
Target Start/End: Original strand, 21967121 - 21967288
Alignment:
188 gttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcat 287  Q
    ||||| || |||| |||||| ||||||| | ||||||||||||| |||| || || | |||||||||||||||||| ||||| ||| ||||||||||| |    
21967121 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcct 21967220  T
288 ccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    | || |||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||| |||||    
21967221 ctggatcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatct 21967288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 21967576 - 21967734
Alignment:
197 tgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcat 296  Q
    |||| |||||| ||||||| | ||||||||||||| |||| || || | |||||||||||||||||| ||||| ||| ||||||||||| || || ||||    
21967576 tgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctggatcat 21967675  T
297 tttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| || ||||| |||||    
21967676 tttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatct 21967734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 18978814 - 18978856
Alignment:
33 tccaacaatgcccgtacatgatacatattacaaatattcattt 75  Q
    |||||||| ||| |||||||||||| |||||||||||||||||    
18978814 tccaacaaagccagtacatgatacaaattacaaatattcattt 18978856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 22210088 - 22210046
Alignment:
33 tccaacaatgcccgtacatgatacatattacaaatattcattt 75  Q
    ||||| || |||||| |||||||||||||||||||||||||||    
22210088 tccaataaagcccgtgcatgatacatattacaaatattcattt 22210046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 72 - 355
Target Start/End: Original strand, 14693 - 14976
Alignment:
72 atttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgc 171  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  ||| || | ||||||||||| |||||||||||||||||| |||||||||||    
14693 atttaataaactatcgaggaataaaagtacttgcagacatttgattgaatgagaaaagtgcagaactattggcagattgagtagaacttgattcttgtgc 14792  T
172 aagaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacg 271  Q
    ||||||||  ||||  ||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||     
14793 aagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttgtggagttggtaaatcaattgcataactgctaagataagaagcaactgtcaca 14892  T
272 atcgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
    || ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
14893 attgaaggtctagcattcgggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct 14976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 74 - 355
Target Start/End: Complemental strand, 50599 - 50318
Alignment:
74 ttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgcaa 173  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||| |||||||||||||||||| |||||||||||||    
50599 ttaataaactatcgaggaataaaagtacttgcagacatttgattgattgagaatagtgcagaactattggcagattgagtagaacttgattcttgtgcaa 50500  T
174 gaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgat 273  Q
    ||||||  ||||  ||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
50499 gaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaat 50400  T
274 cgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
     ||||||||||||| |||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||    
50399 tgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatct 50318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 74 - 355
Target Start/End: Complemental strand, 8133 - 7852
Alignment:
74 ttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgcaa 173  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||| || | ||||||||||| |||||||||||||||||| |||||||||||||    
8133 ttaataaactatcgaggaataaaagtacttgcagacatttgattgtatgagaaaagtgcagaactattggcagattgagtagaacttgattcttgtgcaa 8034  T
174 gaacgtttgaatccgttctgccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgat 273  Q
    ||||||  ||||  ||||| |||||||||| |||||||||||||  ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
8033 gaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaat 7934  T
274 cgaaggtctagcatccgggtcattttgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaataatct 355  Q
     ||||||||||||| |||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||    
7933 tgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatct 7852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University