View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_high_19 (Length: 343)
Name: NF8479_2D_high_19
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 15628851 - 15628549
Alignment:
| Q |
18 |
ctattatcctctaccattcattaccttgcattgcaagcaattcccttagctgaattctcttattcatcatgccaacccttgttcaattcttgatactagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15628851 |
ctattatcctctaccattcattaccttgcattgcaagcaattcccttagctgaattctcttattcatcatgccaacccttgttcaattcttgatactagt |
15628752 |
T |
|
| Q |
118 |
tttactattgttcaattttgtgccagttttatcgcaagttaatcagttcttgtatgcaggattcaaggatgttggtcccaacaatctaaccttgaatgga |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15628751 |
tttactattgttcaattttgtgtcagttttatcccaagttaaccagttcttgtatgcaggattcaaggatgttggtcccaacaatcttaccttgaatggt |
15628652 |
T |
|
| Q |
218 |
tttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttacacattaccttttcagctaaggaact |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15628651 |
tttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttactcattaccttttcagctaaggaact |
15628552 |
T |
|
| Q |
318 |
cga |
320 |
Q |
| |
|
||| |
|
|
| T |
15628551 |
cga |
15628549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 318
Target Start/End: Original strand, 22932985 - 22933121
Alignment:
| Q |
182 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggcc |
281 |
Q |
| |
|
||||||| |||| ||| |||| ||||||| || || ||||| |||||||||||||||| || ||||||||||||||| | ||| ||| |||||||| |
|
|
| T |
22932985 |
aaggatggtggtgccagcaatttaaccttaaacggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggcc |
22933084 |
T |
|
| Q |
282 |
atgctttttacacattaccttttcagctaaggaactc |
318 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||| |
|
|
| T |
22933085 |
atgctttttactctcaaccttttcagctaaagaactc |
22933121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 22922603 - 22922526
Alignment:
| Q |
182 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaat |
259 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||| | ||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
22922603 |
aaggatgttggtccaaaaaacctaaccttaaatggtatagcagagatagaaaaaaatggtataataagattaacaaat |
22922526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 22932867 - 22932915
Alignment:
| Q |
61 |
ccttagctgaattctcttattcatcatgccaacccttgttcaattcttg |
109 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
22932867 |
ccttagctgatttctcttgttcatcatgccaacccatcttcaattcttg |
22932915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 24382736 - 24382698
Alignment:
| Q |
221 |
gcagagatagagaaaaatgggatgataagattaacaaat |
259 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
24382736 |
gcagagatagagaaaaatggtataataagattaacaaat |
24382698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 36386045 - 36386081
Alignment:
| Q |
223 |
agagatagagaaaaatgggatgataagattaacaaat |
259 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36386045 |
agagatagagaaaaatggtataataagattaacaaat |
36386081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University