View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_high_22 (Length: 322)
Name: NF8479_2D_high_22
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 2788726 - 2789037
Alignment:
| Q |
1 |
aagatagaatgaaaaccattcatgttgtggtagtgagtgcacacaaatgaactgactgataaaaacaaacgacattaaaatgtatttttaattaagataa |
100 |
Q |
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| T |
2788726 |
aagatagaatgaaaaccattcatgttgtggtcgtgagtgc-cacaaatgaactgactgataaaaacaaacgacattaaaatgtatttttaattaagataa |
2788824 |
T |
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| Q |
101 |
cgctgattaaaataagaaagaattatacactatgctcagacgctacttgagatagaatctg---------aagnnnnnnnncgttacatcagtgaaaaac |
191 |
Q |
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| T |
2788825 |
cactgattaaaataagaaagaattatacactatgctcagacgctacttgagatagaatctgaaaaaaaaaaaaaaaaaaaacgttacatcagtgaaaaac |
2788924 |
T |
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| Q |
192 |
actagaaacttgtgatagaagtaccgttaccaaagttttgttaccggtataccacatttagaggaacttcacaatcttgattcttgagcatagaatcggt |
291 |
Q |
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| T |
2788925 |
actagaaactcgtgatagaagtaccgttaccaaagttttgttaccggcataccacatttagaggaacttcacaatcttgattcttgagcatagaatcggt |
2789024 |
T |
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| Q |
292 |
gatatgacgtacc |
304 |
Q |
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| T |
2789025 |
gatatgacgtacc |
2789037 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22365455 - 22365504
Alignment:
| Q |
1 |
aagatagaatgaaaaccattcatgttgtg--gtagtgagtgcacacaaat |
48 |
Q |
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| T |
22365455 |
aagatagaatgaaaatcatttatgttgtgtggtagtgagtgcacacaaat |
22365504 |
T |
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