View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_high_28 (Length: 250)
Name: NF8479_2D_high_28
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_28 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 4946892 - 4947079
Alignment:
| Q |
48 |
cttgttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatt |
147 |
Q |
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| T |
4946892 |
cttgttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatt |
4946991 |
T |
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| Q |
148 |
tcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgt |
235 |
Q |
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| T |
4946992 |
tcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgt |
4947079 |
T |
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Target: scaffold0361 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 52 - 231
Target Start/End: Original strand, 11568 - 11747
Alignment:
| Q |
52 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatttcat |
151 |
Q |
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| T |
11568 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatactatttcataaataaacaatttcat |
11667 |
T |
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| Q |
152 |
aaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatg |
231 |
Q |
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| T |
11668 |
aaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatg |
11747 |
T |
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