View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_2D_high_29 (Length: 243)

Name: NF8479_2D_high_29
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_2D_high_29
NF8479_2D_high_29
[»] chr7 (6 HSPs)
chr7 (1-243)||(46628714-46628956)
chr7 (75-211)||(46636114-46636250)
chr7 (77-229)||(46644069-46644221)
chr7 (1-45)||(46616530-46616574)
chr7 (75-211)||(46617416-46617552)
chr7 (1-47)||(46644544-46644590)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 46628714 - 46628956
Alignment:
Q  1 tgttgaagtgagggttttgatgtttcagatcgtattgccaatttttgcaatcttggctgaaaattgctcatgttgttttgttttcctatttttcttggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46628714 tgttgaagtgagggttttgatgtttcagatcgtattgccaatttttgcaatcttggctgaaaattgctcatgttgttttgttttcctatttttcttggca 46628813  T
Q  101 gatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtccgcaaataggtccggaataccaggcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  46628814 gatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtcctcgaataggtccggaataccaggcg 46628913  T
Q  201 gaaattccttccgtgattaagaaatcagagaagctcccacttc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46628914 gaaattccttccgtgattaagaaatcagagaagctcccacttc 46628956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 46636114 - 46636250
Alignment:
Q  75 gttttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtc 174  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| | |||  ||||  || || || |||||  ||||    
T  46636114 gttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatattttcatgcaccattcgtctgatggagaccctgaattcagtc 46636213  T
Q  175 cgcaaataggtccggaataccaggcggaaattccttc 211  Q
    | | ||||||||  | |||||||||||||||||||||    
T  46636214 ctcgaataggtcatgcataccaggcggaaattccttc 46636250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 46644221 - 46644069
Alignment:
Q  77 tttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtccg 176  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| ||  ||||| |||||| || ||||  |||  ||| | ||||||||  |||||     
T  46644221 tttgttttcctatttttcttggcagatggtgtcctttgagcagaatgattttgatactttcattgaacatgcatctgatgatgaccttgaattcagtcca 46644122  T
Q  177 caaataggtccggaataccaggcggaaattccttccgtgattaagaaatcaga 229  Q
    | ||| ||||| || |||||||| |||||||||||  ||||| ||||||||||    
T  46644121 cgaatcggtcctgagtaccaggcagaaattccttctttgattgagaaatcaga 46644069  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46616530 - 46616574
Alignment:
Q  1 tgttgaagtgagggttttgatgtttcagatcgtattgccaatttt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46616530 tgttgaagtgagggttttgatgtttcagatcgtattgccaatttt 46616574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 46617416 - 46617552
Alignment:
Q  75 gttttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcatggatcatgtgtcttgtgaaggccttgaatcgagtc 174  Q
    |||||||||| |||| |||||| ||||||||||| |||||| ||||||||||| | ||||||||||||  |||  |||  |  || || |||||  ||||    
T  46617416 gttttgttttactatatttctttgcagatggtgtcctttaaccagaattataacgttattttcatggacgatgcatctgatagagaccctgaattcagtc 46617515  T
Q  175 cgcaaataggtccggaataccaggcggaaattccttc 211  Q
    | | ||||||||  | |||||||||||||||||||||    
T  46617516 ctcgaataggtcatgcataccaggcggaaattccttc 46617552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46644590 - 46644544
Alignment:
Q  1 tgttgaagtgagggttttgatgtttcagatcgtattgccaatttttg 47  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||    
T  46644590 tgttgaagtaagggttttcatttttcagatcatattgccaatttttg 46644544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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