View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_high_34 (Length: 206)
Name: NF8479_2D_high_34
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 15449690 - 15449856
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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| T |
15449690 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggaaattatattcacaaggtctatagttcatgggaaga |
15449789 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaa |
189 |
Q |
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| T |
15449790 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagtttcaggcggtaaa |
15449856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 15488567 - 15488733
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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| T |
15488567 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
15488666 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaa |
189 |
Q |
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| T |
15488667 |
ggattcatatgtggttgatagtaaggagatgagttcatatcaacccttagaagcttcgggcggtaaa |
15488733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 15430172 - 15430338
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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| T |
15430172 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
15430271 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaa |
189 |
Q |
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| T |
15430272 |
ggattcatatgtggttgatagtaaggagatgaattcatatcaacccttagaagcttcgggcggtaaa |
15430338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 16943261 - 16943427
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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|||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
16943261 |
agattattgaagatgaggaagctttgaagatagttgatgatgatgagtaattatttaatattgtcgattatattcacaaggtctatagttcaagggaaga |
16943360 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
16943361 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccgtagaagcttcaggcagtaaa |
16943427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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