View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_high_4 (Length: 580)
Name: NF8479_2D_high_4
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 24 - 565
Target Start/End: Original strand, 46628196 - 46628736
Alignment:
| Q |
24 |
ttatttacctatttatttttgttattatta---actttagtctttgatgcttataataccccttgnnnnnnn-taccttagagcatttaaccaacgtttc |
119 |
Q |
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| T |
46628196 |
ttatttacctatttatttttgttattattattaactttagtctttgatgcttat--taccccttgaaaaaaaataccttagagcatttaaccaacgtttc |
46628293 |
T |
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| Q |
120 |
tatcaatcactttcccctcaaaggttaacaaaatattcattcattcacctttctctcttatcaacaacccttaacttgaacaaccaacgtgcttttgtta |
219 |
Q |
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| T |
46628294 |
tatcaatcactttcccctcaaaggttaacaaaatattcattcattcacctttctctcttatcaacaacccttaacttgatcaaccaacgtgcttttgtta |
46628393 |
T |
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| Q |
220 |
ttgtatatgtgtgtgacaaataacattgatttatagggacaaacatgtatactttcaatatttcgattgattgttatccatgaatatgcatgtttgttat |
319 |
Q |
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| T |
46628394 |
ttgtatatgtgtgtgacaaataacattgatttatagggacaaacatgtatactttcaatatttcgattgattgttatccatgaatgtgcatgtttgttat |
46628493 |
T |
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| Q |
320 |
atcttctgctttccacgatttattttaatcttcatttatttatttacacgttttagttgattcatataagnnnnnnnnnnnnnnnnnnactttatatgtt |
419 |
Q |
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| T |
46628494 |
atcttctgctttccacgatttattttaatcttcatttatttatttacacgttttagttgattcatataag---gttttttttttttttactttatatgtt |
46628590 |
T |
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| Q |
420 |
ttcccttggtcgtggtcattgtattgtgcacttatgaagttgtgttaagnnnnnnntttaacaatttttggtttattgacaaagaaaaataatagttttt |
519 |
Q |
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| T |
46628591 |
ttcccttggtcgtggtcattgtattgtgcacttatgaagttgtgttaagaaaaaaaattaacaatttttggtttattgacaaagaaaaataatagttttt |
46628690 |
T |
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| Q |
520 |
aatgtgagtgatttaggtaaccatgttgaagtgagggttttgatgt |
565 |
Q |
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| T |
46628691 |
aacgtgagtgatttaggtaaccatgttgaagtgagggttttgatgt |
46628736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 46616467 - 46616552
Alignment:
| Q |
480 |
acaatttttggtttattgacaaagaaaaataatagtttttaatgtgagtgatttaggtaaccatgttgaagtgagggttttgatgt |
565 |
Q |
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| T |
46616467 |
acaattttcggtttatttacaatgaaaaataatattttttaatgtgagtgatttaggtaaccgtgttgaagtgagggttttgatgt |
46616552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 560
Target Start/End: Complemental strand, 46644624 - 46644573
Alignment:
| Q |
508 |
ataatagtttttaatgtgagtgatttaggtaaccatgttgaagtgagggtttt |
560 |
Q |
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| T |
46644624 |
ataatagttttta-tgtgagttgtttaggtaaccatgttgaagtaagggtttt |
46644573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Original strand, 46617051 - 46617100
Alignment:
| Q |
484 |
tttttggtttattgacaaagaaaaataatagtttttaatgtgagtgattt |
533 |
Q |
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| T |
46617051 |
tttttggtttattgacaagggaaaattatagctttttatgtgagtgattt |
46617100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 15772308 - 15772273
Alignment:
| Q |
151 |
aatattcattcattcacctttctctcttatcaacaa |
186 |
Q |
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| T |
15772308 |
aatattcattcattcacgtttctctcttatcaacaa |
15772273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 56085995 - 56085949
Alignment:
| Q |
310 |
tgtttgttatatcttctgctttccacgatttattttaatcttcattt |
356 |
Q |
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| T |
56085995 |
tgtttgttatattttctgctttccaccatttattttactgttcattt |
56085949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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