View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_high_8 (Length: 497)
Name: NF8479_2D_high_8
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 30390860 - 30391296
Alignment:
| Q |
18 |
gaacaaaagtatgacatagaaagtcgtgtaggatatcatagttttagccgcccaaattctataaaaatctatggttcttatttcatgtattcacacttgt |
117 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30390860 |
gaacaaaagtataacatagaaagtcgtgtaggacatcatagttttagccacccaaattctataaaaatctatggttcttatttcatgtattcacacttgt |
30390959 |
T |
|
| Q |
118 |
acttccttttatttcatt---acattctatacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttg |
214 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30390960 |
acttccttttatttcattgttacattctgtacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttg |
30391059 |
T |
|
| Q |
215 |
atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt |
314 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
30391060 |
atatggtcttggaaggtgctgaatttgttatggttgaagccaaagaagctagagaagctcttaagagaacaaggacttaaagggaatcaatataggcttt |
30391159 |
T |
|
| Q |
315 |
tagttggagacatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctacta |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
30391160 |
tagttggagacatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaacctctccgatgatatcacgccacgtgtcattccctacta |
30391259 |
T |
|
| Q |
415 |
caatgaaagtgttagaactcatggtatgtatactgtt |
451 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||| |
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| T |
30391260 |
caatgaaagtgttagaattcatggtatgtgtactgtt |
30391296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 153 - 412
Target Start/End: Original strand, 30381519 - 30381786
Alignment:
| Q |
153 |
cttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggtt |
243 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||| ||||||||||| | ||||||||| ||| || ||| |
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| T |
30381519 |
cttcaccaattacaaactgagaa-tggaatgggtttctgggataattctcatcattgtaacacttggtttgatatgggcatggaaggtgttgagtttgtt |
30381617 |
T |
|
| Q |
244 |
atggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaac |
343 |
Q |
| |
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||| ||| |||||||||||||||||||||||||| ||||||||| || |||| ||| |||||||| |||| |||| ||||| || || |||||| |
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| T |
30381618 |
gtggctgaggccaaagaagctagagaagctcttaagagaacaaggctttcaaggaaattcatataggattttgcttggggacataaaagatctttttaag |
30381717 |
T |
|
| Q |
344 |
atggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac |
412 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
30381718 |
atggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataacaccacgtgtaattccctac |
30381786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 390
Target Start/End: Original strand, 30480664 - 30480830
Alignment:
| Q |
224 |
tggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggag |
323 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||||||| | | ||| ||||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
30480664 |
tggaagatgctgatttggtcatggttgaagccaaagaagctagaaagagtgctaagagaacaaggtcttaaagggaatccttataggtttttagttggag |
30480763 |
T |
|
| Q |
324 |
acatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat |
390 |
Q |
| |
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| T |
30480764 |
acatgaaggagtatttaaagatggaaaaggaagtcagatccaaacccttgaatctctcggacgatat |
30480830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 234 - 390
Target Start/End: Original strand, 30427921 - 30428077
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| || |
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| T |
30427921 |
tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaatga |
30428020 |
T |
|
| Q |
334 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat |
390 |
Q |
| |
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| |||| ||| ||||||||| | ||| ||| |||||||||| || |||||||| |
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| T |
30428021 |
tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat |
30428077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 30421728 - 30421824
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30421728 |
tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaa |
30421824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 30472751 - 30472863
Alignment:
| Q |
215 |
atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt |
314 |
Q |
| |
|
|||||| | |||||| | |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||| |
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| T |
30472751 |
atatgggcatggaagattctgaattggttatggttgaagccaaagaagctagagaaatttctaagagaacaaggactaaaagggaattcatataggcttt |
30472850 |
T |
|
| Q |
315 |
tagttggagacat |
327 |
Q |
| |
|
||||||||||||| |
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|
| T |
30472851 |
tagttggagacat |
30472863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 390
Target Start/End: Original strand, 30465724 - 30465880
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
333 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| | ||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||| || |
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|
| T |
30465724 |
tgaattggttatggttgaagccaaaaaagctagaaaagttgctaagagaacaaggactaaaaggaaattcatataggcttttagttggagacatgaatga |
30465823 |
T |
|
| Q |
334 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat |
390 |
Q |
| |
|
| |||| ||| ||||||||| | ||| ||| |||||||||| || |||||||| |
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|
| T |
30465824 |
tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat |
30465880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 412
Target Start/End: Complemental strand, 8382231 - 8382052
Alignment:
| Q |
233 |
ctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagg |
332 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| ||| || ||| | ||||| ||| | |||| ||| |||||| |
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|
| T |
8382231 |
ctgaattggatttggttgaagccaaagaggctagagaagctcttacgagaacaaggatgtaatggaaattcttatagacttgtgcttggggacttgaagg |
8382132 |
T |
|
| Q |
333 |
agtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac |
412 |
Q |
| |
|
| | | ||| |||| |||| |||||||||||||| | ||| | || ||||||||||| | || ||||||||||||||| |
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|
| T |
8382131 |
attcatataagatgggaaagaaagccaaatccaaacccatggaactgtcggatgatataatccctcgtgtcattccctac |
8382052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 403
Target Start/End: Original strand, 23766049 - 23766218
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
333 |
Q |
| |
|
|||||||| | ||| |||||||||||||| | |||||||| |||| ||||||||| ||| ||||||| || ||||| ||||| ||||||| ||||| |
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|
| T |
23766049 |
tgaattggatgtggctgaagccaaagaagatggagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga |
23766148 |
T |
|
| Q |
334 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc |
403 |
Q |
| |
|
|||||| ||| ||||| ||| |||||||| | |||||||| ||||||||||| ||||||||||| |
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|
| T |
23766149 |
ttattttgtaatgcaaaagaaagttcaatccaaacccatgaatctgtcggatgatattgcgccacgtgtc |
23766218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 403
Target Start/End: Complemental strand, 23785683 - 23785514
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
333 |
Q |
| |
|
|||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| ||| ||||||| || ||||| ||||| ||||||| ||||| |
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|
| T |
23785683 |
tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga |
23785584 |
T |
|
| Q |
334 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc |
403 |
Q |
| |
|
|||||| ||| ||||| ||| |||||||| | |||||||| || |||||||| ||||||||||| |
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| T |
23785583 |
ttattttgtgatgcaaaagaaagttcaatccaaacccatgaatctatctgatgatattgcgccacgtgtc |
23785514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 327
Target Start/End: Original strand, 30434448 - 30434541
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacat |
327 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| || | | |||||||||||||||||| ||| |||| || ||||||||||||||||| |
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|
| T |
30434448 |
tgaattggatatggttgaagccaaaaaagctagaaaaagagctcagagaacaaggacttaaaggaaattcatacagacttttagttggagacat |
30434541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 23788779 - 23788846
Alignment:
| Q |
234 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaat |
301 |
Q |
| |
|
|||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| ||| ||||||| |
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|
| T |
23788779 |
tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcgagggaat |
23788846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 156 - 412
Target Start/End: Complemental strand, 41631951 - 41631686
Alignment:
| Q |
156 |
caccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggttatg |
246 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| | |||| | | ||||||||||| || |
|
|
| T |
41631951 |
caccaattacaaagagataaatggaatggtattcaagcataattcccatcattgtgacagttggtttgatatgggcatggaggatactgaattggttgtg |
41631852 |
T |
|
| Q |
247 |
gttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaacatg |
346 |
Q |
| |
|
||| | |||||||||||||||||| || |||| ||||||||| ||| ||||||||||||||||| |||| ||||||||| ||||| | |||| ||| |
|
|
| T |
41631851 |
gttaaggccaaagaagctagagaaactgttaagagaacaaggtcttcaagggaatccatataggattttgtatggagacataaaggatcttcttaagatg |
41631752 |
T |
|
| Q |
347 |
gaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac |
412 |
Q |
| |
|
||||||||||| | || ||||| ||||||||| | |||||||| | ||||||||| ||||||||| |
|
|
| T |
41631751 |
gaaaaggaagctaggtctaaatccatgaatctcaccgatgatataatgccacgtgtaattccctac |
41631686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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