View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_low_13 (Length: 538)
Name: NF8479_2D_low_13
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 28612070 - 28611568
Alignment:
| Q |
14 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcattgaagcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28612070 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcatcgaagcag |
28611971 |
T |
|
| Q |
114 |
aagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggt |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611970 |
aagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggt |
28611871 |
T |
|
| Q |
214 |
atcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28611870 |
atcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct----tgtgtgtgtgag |
28611775 |
T |
|
| Q |
314 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
28611774 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaa |
28611675 |
T |
|
| Q |
414 |
atattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgag |
509 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611674 |
atattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgag |
28611575 |
T |
|
| Q |
510 |
cccaaca |
516 |
Q |
| |
|
||||||| |
|
|
| T |
28611574 |
cccaaca |
28611568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 28607308 - 28606806
Alignment:
| Q |
14 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcattgaagcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28607308 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcatcgaagcag |
28607209 |
T |
|
| Q |
114 |
aagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggt |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607208 |
aagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggt |
28607109 |
T |
|
| Q |
214 |
atcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28607108 |
atcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct----tgtgtgtgtgag |
28607013 |
T |
|
| Q |
314 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
28607012 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaa |
28606913 |
T |
|
| Q |
414 |
atattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgag |
509 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606912 |
atattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgag |
28606813 |
T |
|
| Q |
510 |
cccaaca |
516 |
Q |
| |
|
||||||| |
|
|
| T |
28606812 |
cccaaca |
28606806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 106 - 516
Target Start/End: Original strand, 14178646 - 14179056
Alignment:
| Q |
106 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178646 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14178745 |
T |
|
| Q |
206 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnn |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178746 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct----tgtg |
14178841 |
T |
|
| Q |
306 |
nnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14178842 |
tgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttc |
14178941 |
T |
|
| Q |
406 |
cacgttaaatattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
501 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178942 |
cacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc |
14179041 |
T |
|
| Q |
502 |
tcgtcgagcccaaca |
516 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14179042 |
tcgtcgagcccaaca |
14179056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 106 - 516
Target Start/End: Original strand, 14173892 - 14174302
Alignment:
| Q |
106 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
205 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173892 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14173991 |
T |
|
| Q |
206 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnn |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173992 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct----tgtg |
14174087 |
T |
|
| Q |
306 |
nnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14174088 |
tgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttc |
14174187 |
T |
|
| Q |
406 |
cacgttaaatattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
501 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174188 |
cacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc |
14174287 |
T |
|
| Q |
502 |
tcgtcgagcccaaca |
516 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14174288 |
tcgtcgagcccaaca |
14174302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 102 - 516
Target Start/End: Original strand, 44161538 - 44161949
Alignment:
| Q |
102 |
gcattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
200 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161538 |
gcatcgaagcagaagtgaaaaacacaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaat |
44161635 |
T |
|
| Q |
201 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnn |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44161636 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctct--- |
44161732 |
T |
|
| Q |
301 |
nnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagaggg |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44161733 |
-tgtgtgtgtaagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagaggg |
44161829 |
T |
|
| Q |
401 |
ttttccacgttaaatattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgt |
496 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161830 |
ttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgt |
44161929 |
T |
|
| Q |
497 |
taagctcgtcgagcccaaca |
516 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44161930 |
taagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 103 - 516
Target Start/End: Original strand, 11104424 - 11104829
Alignment:
| Q |
103 |
cattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatac |
202 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11104424 |
cattgaagcagaagtca-aatacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatac |
11104520 |
T |
|
| Q |
203 |
accgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnn |
302 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11104521 |
accgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctct----- |
11104615 |
T |
|
| Q |
303 |
nnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||| || |
|
|
| T |
11104616 |
ttgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgatattagaggatt |
11104714 |
T |
|
| Q |
403 |
ttccacgttaaatattggtgttca-nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
501 |
Q |
| |
|
||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104715 |
ttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
11104814 |
T |
|
| Q |
502 |
tcgtcgagcccaaca |
516 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11104815 |
tcgtcgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 213 - 516
Target Start/End: Complemental strand, 48827000 - 48826702
Alignment:
| Q |
213 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnna |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgta----a |
48826905 |
T |
|
| Q |
313 |
gagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtta |
412 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
48826904 |
gagagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgtta |
48826806 |
T |
|
| Q |
413 |
aatattggtgttc--annnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagc |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
48826805 |
aatattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatc |
48826708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 320 - 421
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
| Q |
320 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattg |
419 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
420 |
gt |
421 |
Q |
| |
|
|| |
|
|
| T |
48708156 |
gt |
48708155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 24726381 - 24726288
Alignment:
| Q |
312 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc |
405 |
Q |
| |
|
||||| ||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||| ||||||| |
|
|
| T |
24726381 |
agagaatggagagaatattattatgttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Complemental strand, 37040927 - 37040424
Alignment:
| Q |
16 |
tgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggct-catttcccctataaatagaggcaatggaattgaaggaaagcattgaagcaga |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
37040927 |
tgacttttagtgtaagagtgtgtgaaccaaatccaactcttacggcttcatttctcttataaatagagacaatgatagtgaaggaaagcattgaagcaga |
37040828 |
T |
|
| Q |
115 |
agtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggta |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37040827 |
agtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggta |
37040728 |
T |
|
| Q |
215 |
tcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
37040727 |
tcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctct----tgtgtgtgtgaga |
37040632 |
T |
|
| Q |
315 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaa |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37040631 |
gagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaa |
37040532 |
T |
|
| Q |
415 |
tattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagc |
510 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040531 |
tattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgtcgagc |
37040432 |
T |
|
| Q |
511 |
ccaacaga |
518 |
Q |
| |
|
|||||||| |
|
|
| T |
37040431 |
ccaacaga |
37040424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 98 - 516
Target Start/End: Original strand, 15290184 - 15290594
Alignment:
| Q |
98 |
gaaagcattgaagcagaagtgagaatacaaa---gcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtggg |
194 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
15290184 |
gaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgt--agaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg- |
15290274 |
T |
|
| Q |
195 |
aaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
15290275 |
aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgtatc |
15290371 |
T |
|
| Q |
295 |
tctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtatt |
394 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| | |||| ||||| |
|
|
| T |
15290372 |
tcttgtgtgtgta----agagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtatt |
15290467 |
T |
|
| Q |
395 |
agagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgcgctgcaagatccaatctc-ttttggattttggaattttaatttaca |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
15290468 |
agagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttaca |
15290567 |
T |
|
| Q |
490 |
cttgcgttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15290568 |
attgcgttaagctcgtcgagcccaaca |
15290594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 104 - 516
Target Start/End: Original strand, 12098958 - 12099361
Alignment:
| Q |
104 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
203 |
Q |
| |
|
||||||| |||||||| | ||||||| || ||||||| |||||| ||||| | ||||||||||||||||||||||| ||||| | | | |||||| | |
|
|
| T |
12098958 |
attgaagtagaagtgaaactacaaagtttttgtgtgt--agaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaataga |
12099051 |
T |
|
| Q |
204 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
303 |
Q |
| |
|
| ||| |||||||||||||||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||| |
|
|
| T |
12099052 |
ttgagtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcg |
12099151 |
T |
|
| Q |
304 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
12099152 |
tgta----agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggttt |
12099247 |
T |
|
| Q |
404 |
tccacgttaaatattggtgttca-nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagct |
502 |
Q |
| |
|
| ||||| |||||||| | |||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
12099248 |
ttcacgtaaaatattgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaact |
12099347 |
T |
|
| Q |
503 |
cgtcgagcccaaca |
516 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12099348 |
cgtcgagcccaaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 138 - 369
Target Start/End: Original strand, 12082002 - 12082227
Alignment:
| Q |
138 |
tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc |
237 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| ||||||||||| | | |||||||||| | ||||| ||||| |||||||||||||||||| || |
|
|
| T |
12082002 |
tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgc |
12082100 |
T |
|
| Q |
238 |
tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatat |
337 |
Q |
| |
|
||||| |||||| |||| |||||| || |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
12082101 |
tataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctct----tttccgtgtaagagagtggagaaaatattgtaatat |
12082196 |
T |
|
| Q |
338 |
tctttaatatagtggaatatttttcggagttt |
369 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| |
|
|
| T |
12082197 |
tc-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 15302891 - 15302960
Alignment:
| Q |
98 |
gaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
167 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302891 |
gaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
| Q |
434 |
gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084669 |
gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 2757418 - 2757307
Alignment:
| Q |
312 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt |
411 |
Q |
| |
|
||||||||||||||||| || |||||| || |||||||||||||| ||||| | |||||| | |||||||||| | || |||| |||| ||| || || |
|
|
| T |
2757418 |
agagagtggagagaatagtgcaatatttttaaatatagtggaata-ttttcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatatt |
2757320 |
T |
|
| Q |
412 |
aaatattggtgtt |
424 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2757319 |
aaatattggtgtt |
2757307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 2757273 - 2757236
Alignment:
| Q |
456 |
caatctcttttggattttggaattttaatttacacttg |
493 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2757273 |
caatttcttttgaattttggaattttaatttacacttg |
2757236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 104 - 516
Target Start/End: Original strand, 12930629 - 12931040
Alignment:
| Q |
104 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930629 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
12930728 |
T |
|
| Q |
204 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930729 |
ccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctct----tg |
12930824 |
T |
|
| Q |
304 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12930825 |
tgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
12930924 |
T |
|
| Q |
404 |
tccacgttaaatattggtgttca---nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930925 |
tccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag |
12931024 |
T |
|
| Q |
501 |
ctcgtcgagcccaaca |
516 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12931025 |
ctcgtcgagcccaaca |
12931040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 104 - 517
Target Start/End: Original strand, 12935375 - 12935787
Alignment:
| Q |
104 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935375 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
12935474 |
T |
|
| Q |
204 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935475 |
ccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctct----tg |
12935570 |
T |
|
| Q |
304 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12935571 |
tgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
12935670 |
T |
|
| Q |
404 |
tccacgttaaatattggtgttca---nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12935671 |
tccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaag |
12935770 |
T |
|
| Q |
501 |
ctcgtcgagcccaacag |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12935771 |
ctcgtcgagcccaacag |
12935787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 26505055 - 26504985
Alignment:
| Q |
312 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttt |
382 |
Q |
| |
|
||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | |||||||| |
|
|
| T |
26505055 |
agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggtttt |
26504985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 426
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
314 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa |
413 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || |||||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
414 |
atattggtgttca |
426 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 17124041 - 17124139
Alignment:
| Q |
15 |
atgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcattgaagcaga |
114 |
Q |
| |
|
|||||||||||||||||| | ||||||| || || ||||||||||||| ||| | ||||||||||| |||||| | ||||||||||||| |||| ||| |
|
|
| T |
17124041 |
atgacttttggtgtaagaat-tgtgaactaattcaaactcttacggcttgttttct-tataaatagagtcaatggcaatgaaggaaagcatcgaagtaga |
17124138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 508
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
463 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
508 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 104 - 516
Target Start/End: Original strand, 34907092 - 34907503
Alignment:
| Q |
104 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907092 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
34907191 |
T |
|
| Q |
204 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907192 |
ccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctct----tg |
34907287 |
T |
|
| Q |
304 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34907288 |
tgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
34907387 |
T |
|
| Q |
404 |
tccacgttaaatattggtgttca---nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907388 |
tccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag |
34907487 |
T |
|
| Q |
501 |
ctcgtcgagcccaaca |
516 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34907488 |
ctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 34906969 - 34907056
Alignment:
| Q |
14 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34906969 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatagaattgaaagaaa |
34907056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 14 - 516
Target Start/End: Original strand, 8539048 - 8539548
Alignment:
| Q |
14 |
catgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcattgaagcag |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8539048 |
catgacttttggtgtaagag-gtgtgaactatttccaactcttatggcttatttcccctataaatagaggca-tggaattgaaggaaagcatcgaagcag |
8539145 |
T |
|
| Q |
114 |
aagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggt |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
8539146 |
aagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggt |
8539245 |
T |
|
| Q |
214 |
atcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacact---atattgtatctctnnnnnnnnnnnnn |
310 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
8539246 |
atcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcac-ggaaacactataatattgtatctct----tgtgtgtgt |
8539340 |
T |
|
| Q |
311 |
nagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgt |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
8539341 |
aagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttccacgt |
8539440 |
T |
|
| Q |
411 |
taaatattggtgttca--nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcga |
508 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539441 |
taaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctcgtcga |
8539540 |
T |
|
| Q |
509 |
gcccaaca |
516 |
Q |
| |
|
|||||||| |
|
|
| T |
8539541 |
gcccaaca |
8539548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 98 - 516
Target Start/End: Complemental strand, 29107291 - 29106878
Alignment:
| Q |
98 |
gaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaa |
197 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29107291 |
gaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaa |
29107194 |
T |
|
| Q |
198 |
aatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
296 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29107193 |
aatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctc |
29107095 |
T |
|
| Q |
297 |
tnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattag |
396 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29107094 |
t----tgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattag |
29106999 |
T |
|
| Q |
397 |
agggttttccacgttaaatattggtgttca-nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcg |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29106998 |
agggttttccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaattttaatttacacttgca |
29106899 |
T |
|
| Q |
496 |
ttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
|||||||| |||| ||||||| |
|
|
| T |
29106898 |
ttaagctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 98 - 516
Target Start/End: Complemental strand, 42911408 - 42910993
Alignment:
| Q |
98 |
gaaagcattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaa |
196 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42911408 |
gaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaa |
42911309 |
T |
|
| Q |
197 |
aaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
296 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42911308 |
aaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatctt |
42911209 |
T |
|
| Q |
297 |
tnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattag |
396 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42911208 |
t----tgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattag |
42911114 |
T |
|
| Q |
397 |
agggttttccacgttaaatattggtgttca-nnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcg |
495 |
Q |
| |
|
||||||||||| |||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
42911113 |
agggttttccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttgcg |
42911014 |
T |
|
| Q |
496 |
ttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42911013 |
ttaagctcgtcgagcccaaca |
42910993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
335 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttc |
425 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||| || ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 516
Target Start/End: Complemental strand, 38994779 - 38994699
Alignment:
| Q |
436 |
taccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaaca |
38994699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 108 - 296
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
| Q |
108 |
aagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
207 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg |
51302217 |
T |
|
| Q |
208 |
gtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
296 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302218 |
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 51302937 - 51303019
Alignment:
| Q |
434 |
gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaaca |
51303019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
| Q |
390 |
gtattagagggttttccacgttaaatattggtgttca |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 516
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
335 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttc-annnnnnn |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||| |||||||||||| |||||||||| ||||| | |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc |
2100283 |
T |
|
| Q |
434 |
gctaccgctgcgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
516 |
Q |
| |
|
|| || || ||||||| | || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100282 |
attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 342
Target Start/End: Complemental strand, 2100753 - 2100723
Alignment:
| Q |
312 |
agagagtggagagaatattgtaatattcttt |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2100753 |
agagagtggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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