View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_15 (Length: 519)
Name: NF8479_2D_low_15
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 5 - 519
Target Start/End: Complemental strand, 36443990 - 36443473
Alignment:
| Q |
5 |
atgagatggacatcagtaaaaaatagtattagttaaccataataagaacatgcgcacattgttcacgataaacttgcattattattaactgagtannnnn |
104 |
Q |
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| T |
36443990 |
atgagattgacatgagtaaaaaatagtattagttaaccataataagaacatgcgcacattgttcacgataaacttgcattattattaactgagtattttt |
36443891 |
T |
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| Q |
105 |
nnn-attaattgtactcacctattcgttttttagattcttcagtaagtaatatattctgtctataccatataggaaaatagagaagtaatnnnnnnnn-- |
201 |
Q |
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| T |
36443890 |
ttttattaattgtactcacctattcgttttttagattcttcagtcagtaatatattctgtctataccatataggaaaatagagaagtaataaaaaaaaaa |
36443791 |
T |
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| Q |
202 |
-tagtagataattgaaatattacacaggtaagaaaaatatagtcatatataaagttttaacatcctttttggtattaatcctcttgttttcaagggaaag |
300 |
Q |
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| T |
36443790 |
atagtagataattgaaatattacacaggtaagaaaaatatagtcatatataaggttttaacatcctttttggtattaatcctcttgttttcaagggaaag |
36443691 |
T |
|
| Q |
301 |
agacttgtatttgcttattcggtagagacattacataatatatacagaggttttagggttccgatatcttacttgttcactaaagttatttgacccnnnn |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36443690 |
agagttgtatttgcttattcggtagagacattacataatatatacagaggttttagggttccgatatcttacttgttcgctaaagttatttgacccaaaa |
36443591 |
T |
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| Q |
401 |
nnnnnnnngggaaagagagttgtaatctaaaattacgttgaaaagtaagtcaactctattaattattgttcgatttagggttatctaaaatttcactagc |
500 |
Q |
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| T |
36443590 |
aaaaaaaa-ggaaaggaagttgtaatctaaaattaggttgaaaattaagtcaactctattaattattgttcgatttaggattatctaaaatttcactaac |
36443492 |
T |
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| Q |
501 |
atctaacaataatgctcat |
519 |
Q |
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| T |
36443491 |
atctaacaataatgctcat |
36443473 |
T |
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