View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_18 (Length: 473)
Name: NF8479_2D_low_18
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 5161565 - 5162008
Alignment:
| Q |
20 |
ataatttcagaaaatgaactggaaagcaatgtcttgctttttgcttctacctattgggaatggattatctttgttgatgagagaatggtggaatctacac |
119 |
Q |
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| T |
5161565 |
ataatttcagaaaatgaactggaaagcaatgtcttgctttttgcttctacctattgggaatggattatctttgttgatgagagaatggtggaatctacac |
5161664 |
T |
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| Q |
120 |
aattgaataaaaaaggtgagttttagatatgacaaagtttaaggatgagattgatgacatgacacattagagaacatgagagnnnnnnntggagattgca |
219 |
Q |
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| T |
5161665 |
aattgaataaaaaaggtgagttttagatatgacaaagtttaaggatgagattgatgacatgacacattagagaacatgagagaaaaaaatggagattgca |
5161764 |
T |
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| Q |
220 |
ttatatatgcagtgttggggtgcgaatccgtatttcccacttattcaccttaaaaggtgagatttcaatcattggactacttaac-nnnnnnnnttaatt |
318 |
Q |
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| T |
5161765 |
ttatatatgcggtg-tcgggttcgaatccgtatttcccacttattcaccttaaaaggtgagatttcaatcattggactacttaacaaaaaaaaattaatt |
5161863 |
T |
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| Q |
319 |
tctttaaaatggaattaatctataaacatctattacaattttttgtttagattgtctgctagagcttatggaaacaactaatgacaggtctttgttcatg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5161864 |
tctttaaaatggaattaatctataaacatctattacagttttttttttggactgtctgctagagcttatggaaacaactaatgataggtctttgttcatg |
5161963 |
T |
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| Q |
419 |
tgtcgattgaccggtcatattcgctggaactgttttcatatcagt |
463 |
Q |
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| T |
5161964 |
tgtcgattgaccgatcatattcgctggaactgttttcagatcagt |
5162008 |
T |
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