View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_low_20 (Length: 464)
Name: NF8479_2D_low_20
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 25514158 - 25514545
Alignment:
| Q |
19 |
actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514158 |
actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatccgaacagtagctt |
25514257 |
T |
|
| Q |
119 |
tctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25514258 |
tctgtttataaattaattagtcaaagcctattttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagttttcaaatt |
25514357 |
T |
|
| Q |
219 |
taaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgataagttct |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
25514358 |
taaattacatttccaactcatttctgcagcatgtacttgtggctaataatattactagcactttgaaatgtggtttctgtcgtatggtgtgataaattct |
25514457 |
T |
|
| Q |
319 |
gtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacaccattgtctatgttcgcaaatgtagtgtta |
406 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25514458 |
gtattcaaatgtattttcccaatcattgtgataatctctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgtta |
25514545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 25521202 - 25520830
Alignment:
| Q |
19 |
actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25521202 |
actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatccgaacagtagctt |
25521103 |
T |
|
| Q |
119 |
tctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25521102 |
tctgtttataaattaattagtcaaagcctattttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagttttcaaatt |
25521003 |
T |
|
| Q |
219 |
taaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgataagttct |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
25521002 |
taaattacatttccaactcatttc---------------tggctaataatattactagcactttgaaatgtgatttctgtcgtatggtgtgataagttat |
25520918 |
T |
|
| Q |
319 |
gtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacaccattgtctatgttcgcaaatgtagtgtta |
406 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25520917 |
gtattcaaatgtattttcccaatcattgtgataatctctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgtta |
25520830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 42800178 - 42799862
Alignment:
| Q |
21 |
taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctttc |
120 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || || || || |
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|
| T |
42800178 |
taattctgtgtggccgatcgaaaataaacttaaatatatgtgttttgagttccaaaagacaatacttttttgtcatgtttgaatccaaaatgtcactatc |
42800079 |
T |
|
| Q |
121 |
tgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaattta |
220 |
Q |
| |
|
||||| | |||||||||||||| || ||| |||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
42800078 |
tgtttctgaattaattagtcaaagcttatcttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaattta |
42799979 |
T |
|
| Q |
221 |
aattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgataagttctgt |
320 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| | || |
|
|
| T |
42799978 |
tattacatttccaactcatttgtgcagcatgtacttgtggc---taatattactagcactttgaaatgtggtttctgtcctatggtgtgataag--cggt |
42799884 |
T |
|
| Q |
321 |
attcaaatgtattttcccaatc |
342 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
42799883 |
attcaaatgtattttccaaatc |
42799862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 42803098 - 42802972
Alignment:
| Q |
278 |
actttgaaatgtcgtttctgtcgtatggtgtgataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacac |
377 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| |
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|
| T |
42803098 |
actttgaaatgcggtttctgtcctatggtgtgataagtg--gtattcaaatgtattttcccaatcattatgataagttctgttaagaactttgtttacac |
42803001 |
T |
|
| Q |
378 |
cattgtctatgttcgcaaatgtagtgtta |
406 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
42803000 |
cattgtctatgttttcaaatgtagtgtta |
42802972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 42803307 - 42803222
Alignment:
| Q |
21 |
taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatcc |
106 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |
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|
| T |
42803307 |
taattctgtgtggccgattgaaagtgaccctaaatatatgtgttttgagttctaaaagacattacttttttgtcaagtttgaatcc |
42803222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 42803181 - 42803102
Alignment:
| Q |
113 |
tagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagca |
192 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42803181 |
tagctttctgtttatgaattaattagtcgaagcctattttaatgcttttacaatgattttgagatatcaaaacactagca |
42803102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 8763839 - 8763909
Alignment:
| Q |
19 |
actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattactttt |
89 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
8763839 |
actaattttgtgcggccgatcgaaagtgaacttaaatatatgcgttttgagttccaaaagacattactttt |
8763909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 8776741 - 8776671
Alignment:
| Q |
19 |
actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattactttt |
89 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
8776741 |
actaattttgtgcggccgatcgaaagtgaacttaaatatatgcgttttgagttccaaaagacattactttt |
8776671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 361
Target Start/End: Complemental strand, 27907040 - 27906708
Alignment:
| Q |
21 |
taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctttc |
120 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
27907040 |
taattctctgtggccgatcgtaaatgaacttaaatat--gtgttttgagttccaaaagacattactttcttgtcatgtttgaatctgaaccgtagctttc |
27906943 |
T |
|
| Q |
121 |
tgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaattta |
220 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27906942 |
cgtttatgaattaattagtcgaagcctattttgttgcttttacaatgattttgaggtatcaaaacactagcaagttctgttatattagttttcaaattta |
27906843 |
T |
|
| Q |
221 |
aattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgataagttctgt |
320 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||||||| | |||| |||||||| || |
|
|
| T |
27906842 |
tattacatttccaactcatttctgcagcatgtgcttgtggctaata----tactagcactttgaaatgtggtttctgtcctgtggtatgataagt--ggt |
27906749 |
T |
|
| Q |
321 |
attcaaatgtattttcccaatcgttgtgataatttctgtta |
361 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
27906748 |
attcaaatgtattttaccaatcattgtgataagttctgtta |
27906708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 7387520 - 7387799
Alignment:
| Q |
21 |
taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattactttttt-gtcat-gtttgaatccgaacagtagctt |
118 |
Q |
| |
|
||||||| |||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||| ||||||| |
|
|
| T |
7387520 |
taattctctgtgccctatcgaaaatgaacttaaatatatgtgttttgagttccaaaacacattactttttttgtcatagtttgaatctgaaccgtagctt |
7387619 |
T |
|
| Q |
119 |
tctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaatt |
218 |
Q |
| |
|
|| |||||| |||| ||||||| | ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||| ||||||||| |
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|
| T |
7387620 |
tccgtttatgaattgattagtcgaagcctattttgttgcttttacaatgattttgaggtatcaatacactagcaagttctgctatattagttttcaaatt |
7387719 |
T |
|
| Q |
219 |
taaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgt |
298 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
7387720 |
tatattacatttccaactcatttctgcagcatgtacttgtggctaataatagtactagcactttgaaatgtggtttctgt |
7387799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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