View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_low_26 (Length: 433)
Name: NF8479_2D_low_26
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 96 - 414
Target Start/End: Complemental strand, 46527938 - 46527620
Alignment:
| Q |
96 |
cttgtgttaaggacgagtcaagtggttgaactcaagtggttaatgagcttcagttaatgttcgggagaaccatacttcgaaacctaactgaaacaattaa |
195 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46527938 |
cttgtgttaaggacgaatcaagtggttgaactcaagtggttaatgagcttcagttaatgttcgggagaaccatacttcgaaacctaactgaaacaattaa |
46527839 |
T |
|
| Q |
196 |
cggttagactttacttatcgtccgaactttggattattaaagacatttcccattnnnnnnngaggaagatatggtagaagtctcaccaacattaagtgat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46527838 |
cggttagactttacttatcgtccgaactttggattattaaagacatttcccattaaaaaaatatgaagatatggtagaagtctcaccaacattaagcgat |
46527739 |
T |
|
| Q |
296 |
aatcccatctgagtaggccttatactttgatagaaaccgctccatgattccaagccaccactcagcttatgtgggttttttaaatccggagaatagtgta |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46527738 |
aatcccatctgagtaggccttatactttgatagaaaccgctccatgattccaagccaccactcagcttatgtggtttttttaaatccggagaatagtgta |
46527639 |
T |
|
| Q |
396 |
agctcccaaatgatacata |
414 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
46527638 |
agctcccaaatgatacata |
46527620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 46528083 - 46528007
Alignment:
| Q |
14 |
atcacagggagcggttctataaacgccgtggatgccatgtctggaagaaccnnnnnnntagaagagaaacaaagata |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46528083 |
atcacagggagcggttctataaacgccgtggatgccatgtctggaagaaccaaaaaaatagaagagaaacaaagata |
46528007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 40804462 - 40804424
Alignment:
| Q |
114 |
caagtggttgaactcaagtggttaatgagcttcagttaa |
152 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
40804462 |
caagtggttgaattcaagtggttaatgagcttctgttaa |
40804424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 260 - 414
Target Start/End: Original strand, 43030634 - 43030788
Alignment:
| Q |
260 |
gaagatatggtagaagtctcaccaacattaagtgataatcccatctgagtaggccttatactttgatagaaaccgctccatgattccaagccaccactca |
359 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
43030634 |
gaagatatggtagaattctcaccaacatcatgtgacaatcccatctgagtaggccttatactttgcaagaaaccgcaccatgattccaagccaccactca |
43030733 |
T |
|
| Q |
360 |
gcttatgtgggttttttaaatccggagaatagtgtaagctcccaaatgatacata |
414 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43030734 |
gcttatgtggtttatttaaatccggagaatagtgtaagctcccaaatgatgcata |
43030788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 43030513 - 43030579
Alignment:
| Q |
171 |
ttcgaaacctaactgaaacaattaacggttagactttacttatcgtccgaactttggattattaaag |
237 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
43030513 |
ttcgaaacttgactgaaacaattattggttagactttacttatcggcctaactttggattatcaaag |
43030579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 43030423 - 43030459
Alignment:
| Q |
72 |
tagaagagaaacaaagatatgcatcttgtgttaagga |
108 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
43030423 |
tagaagaaaaacaaagaaatgcatcttgtgttaagga |
43030459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 8141923 - 8141890
Alignment:
| Q |
114 |
caagtggttgaactcaagtggttaatgagcttca |
147 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
8141923 |
caagtggttgagctcaagtggttaatgagcttca |
8141890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 50226985 - 50226944
Alignment:
| Q |
111 |
agtcaagtggttgaactcaagtggttaatgagcttcagttaa |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
50226985 |
agtcaagtggtggaactcaagtggttaatgaactttagttaa |
50226944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University