View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_2D_low_29 (Length: 424)

Name: NF8479_2D_low_29
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_2D_low_29
NF8479_2D_low_29
[»] chr1 (1 HSPs)
chr1 (124-284)||(9416181-9416341)
[»] chr8 (3 HSPs)
chr8 (124-284)||(30710135-30710307)
chr8 (320-393)||(30709606-30709678)
chr8 (25-61)||(30710424-30710460)
[»] chr5 (7 HSPs)
chr5 (326-393)||(10887627-10887693)
chr5 (323-393)||(10873567-10873636)
chr5 (323-393)||(10878638-10878707)
chr5 (323-393)||(10883709-10883778)
chr5 (323-393)||(10046289-10046358)
chr5 (323-393)||(10866669-10866738)
chr5 (323-393)||(39676233-39676302)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 9416181 - 9416341
Alignment:
Q  124 acttaaatctctttctccacgttctcccaccggcggcgaaaacgtcataacccataagctttccaccaccaccggagaaaacctcaattcacagactgtt 223  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||| || ||| |||||| ||| |||||||||||||||||||||||||||||| |||    
T  9416181 acttaaatctcttcctccacgttctcccacgggcggcgaaaacctcaaaagccagaagcttaccatcaccaccggagaaaacctcaattcacagaccgtt 9416280  T
Q  224 tctctctgtgtcgctaatgccgttttcttcggtttcttcttcttcgtcgcgtattttctcc 284  Q
    ||||| |||||||||||  |||||||||||||| ||||||||| ||| || ||||||||||    
T  9416281 tctctttgtgtcgctaacaccgttttcttcggtgtcttcttctccgtggcatattttctcc 9416341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 30710307 - 30710135
Alignment:
Q  124 acttaaatctctttctccacgttctcccaccggcggcgaaaacgtcataacccataagcttt------------ccaccaccaccggagaaaacctcaat 211  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||| |||||| ||||||             ||||||||||||||||||||||||||    
T  30710307 acttaaatctcttcctccacgttctcccgccggcggcgaaaacctcaaaacccagaagcttaaatctcttcctaccaccaccaccggagaaaacctcaat 30710208  T
Q  212 tcacagactgtttctctctgtgtcgctaatgccgttttcttcggtttcttcttcttcgtcgcgtattttctcc 284  Q
    ||||||||||||| |||||||||| |||| || |||||||||||| | ||||||| |||||||||||| ||||    
T  30710207 tcacagactgtttttctctgtgtcactaacgctgttttcttcggtgttttcttctccgtcgcgtatttcctcc 30710135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 30709678 - 30709606
Alignment:
Q  320 cgttggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    ||||||||||||||||||||||||| ||||| | || ||||||||||||||| |||||||||||||||||||||    
T  30709678 cgttggaaggttttgattacgattcgatattgg-gacagtgttgtgagatgccgatagggtttgttcaaattcc 30709606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 30710460 - 30710424
Alignment:
Q  25 ctctcattttccaagcaatcaaacaaaaactttcaaa 61  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30710460 ctctcattttccaaccaatcaaacaaaaactttcaaa 30710424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 10887693 - 10887627
Alignment:
Q  326 aaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    |||||||||| |||||||||||||| | || ||||||| ||||||| |||||||||||||||||||||    
T  10887693 aaggttttgactacgattctatattag-gacagtgttgcgagatgccgatagggtttgttcaaattcc 10887627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10873636 - 10873567
Alignment:
Q  323 tggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    |||||||||||||||||||||||||||| | || ||||||| |||||||  |||||||||||||| |||||    
T  10873636 tggaaggttttgattacgattctatattag-gacagtgttgcgagatgcccatagggtttgttcagattcc 10873567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10878707 - 10878638
Alignment:
Q  323 tggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    |||||||||||||||||||||||||||| | || ||||||| |||||||  |||||||||||||| |||||    
T  10878707 tggaaggttttgattacgattctatattag-gacagtgttgcgagatgcccatagggtttgttcagattcc 10878638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10883778 - 10883709
Alignment:
Q  323 tggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    |||||||||||||||||||||||||||| | || ||||||| |||||||  |||||||||||||| |||||    
T  10883778 tggaaggttttgattacgattctatattag-gacagtgttgcgagatgcccatagggtttgttcagattcc 10883709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 10046289 - 10046358
Alignment:
Q  323 tggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    |||||||||||||||| ||||| ||||| | || ||||||||||||||| |||||| |||||||| |||||    
T  10046289 tggaaggttttgattatgattcgatattag-gacagtgttgtgagatgccgataggatttgttcagattcc 10046358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 10866669 - 10866738
Alignment:
Q  323 tggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    ||||||||||||| ||| |||||||||| | || ||||||| ||||||| ||||||||||||||| |||||    
T  10866669 tggaaggttttgactacaattctatattag-gacagtgttgcgagatgccgatagggtttgttcagattcc 10866738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 39676233 - 39676302
Alignment:
Q  323 tggaaggttttgattacgattctatatttgagatagtgttgtgagatgctgatagggtttgttcaaattcc 393  Q
    |||||||||||||||| ||||||||||| | || | ||||| |||||||  |||||||||||||| |||||    
T  39676233 tggaaggttttgattatgattctatattag-gacaatgttgcgagatgccaatagggtttgttcagattcc 39676302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University