View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_30 (Length: 403)
Name: NF8479_2D_low_30
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 49 - 380
Target Start/End: Complemental strand, 6001716 - 6001385
Alignment:
| Q |
49 |
taaagacaactatgtatttatctatagacaacgcataattaacaacaaaattgttatcttccaaacttctacctacnnnnnnntgacatttacaacggat |
148 |
Q |
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| T |
6001716 |
taaagacaactatatatttatctatagacaacgcataattaacaacaaaattgttattttccaaacttctaccttcagaaaaatgacatttacaacggat |
6001617 |
T |
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| Q |
149 |
ttttatcttacatgtaagtttgtttttaaattgatacctctctaagtttgaggccctctgttaaggatctttttacccacttacacatgactgaccctga |
248 |
Q |
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| T |
6001616 |
ttttatcttacatgcaagtttgtttttaaattgagacctctctaagtttgaggccatatgttaaggatcttcttacccacttgcacatgactgaccctga |
6001517 |
T |
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| Q |
249 |
cacagattccaacagttggatacctacctcagtgtaataagactgattactttcttaaccatcaaaatatttcttgttttatgtttcattaagatatttt |
348 |
Q |
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| T |
6001516 |
cacaggttccaacagttggatacctacctcagtgtagtaagactgattactttcttaaccatcaaaatatttcttgttttatgtttcattaagatatttt |
6001417 |
T |
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| Q |
349 |
ccaattttgtttgctttttgttatgttgcact |
380 |
Q |
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| T |
6001416 |
ccaattttgtttgctttttgttatgttgcact |
6001385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 26515752 - 26515695
Alignment:
| Q |
67 |
tatctatagacaacgcataattaacaacaaaattgttatcttccaaacttctacctac |
124 |
Q |
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| T |
26515752 |
tatctatggacaatgcataattgacaacaaaattgttgtctttcaaacttctacctac |
26515695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 6001773 - 6001741
Alignment:
| Q |
10 |
gatagacaactaagttgcagttaaatatatgag |
42 |
Q |
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| T |
6001773 |
gatagacaactaagttgtagttaaatatatgag |
6001741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 18442089 - 18442030
Alignment:
| Q |
64 |
atttatctatagacaacgcataattaacaacaaaattgttatcttccaaacttctaccta |
123 |
Q |
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| T |
18442089 |
atttatctataaacaatgcataatttacaacaaaattgttgtctttcaaacttgtaccta |
18442030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 6056676 - 6056634
Alignment:
| Q |
82 |
cataattaacaacaaaattgttatcttccaaacttctacctac |
124 |
Q |
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| T |
6056676 |
cataattaacaataaaattgttgtcttccaaacttttacctac |
6056634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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