View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_32 (Length: 393)
Name: NF8479_2D_low_32
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 29285038 - 29285393
Alignment:
| Q |
21 |
aatctggtttttgtaatagtcgcttaaaatgttgtgcactctttaggctaacaggtaaataaactacagaaagaaaagaaaatgtaattagtaagagcta |
120 |
Q |
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| T |
29285038 |
aatctggtttttgtaatagtcgcttaaaatattgtgcactctttaggctaacaggtaaataaactacagaaagaaaagaaaatgtaattagtaagagcta |
29285137 |
T |
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| Q |
121 |
caaactttatagtaagcacttatgcagaaataaacagtaatagaatctcacagaaaatggcgatggagtttttagtttttacaagggggtaatttgaaaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285138 |
caaactttatagtaagcacttatgcagaaataaacagtaataggatctcacagaaaatggcgatggagtttttagtttttacaagggggtaatttgaaaa |
29285237 |
T |
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| Q |
221 |
tattcctgtcattggagatgttgaacttacataatgcagcactattcataagttttttggtgtttccgttttccctcacaacatttcaatatacagacac |
320 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285238 |
tattcctgtcattggagatgttgaacttatataatgcagcactattcataagttttttggtgtttccgttttccctcacaacatttcaatatacagacac |
29285337 |
T |
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| Q |
321 |
ttattttatggttggtcgttagctattctgtccaagtttgttggatgagtacttgt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285338 |
ttattttatggttggtcgttagctattctgtccaagtttgttggatgagtacttgt |
29285393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 35232935 - 35233298
Alignment:
| Q |
21 |
aatctggtttttgtaat-agtcgcttaaaatgttgtgcactctttaggctaacaggtaaataaactaca------gaaagaaaagaaaatgtaattagta |
113 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
35232935 |
aatctggtttttgtaatcagtcgcttaaaatattgtgcactctttaggctaacaggtaaataaacaacataaaagaaaagaaaagaaaatgtaattagta |
35233034 |
T |
|
| Q |
114 |
agagctacaaactttatagtaagcacttatgcagaaataaacagtaatagaatctcacag-aaaatggcgatggagtttttagtttttacaagggggtaa |
212 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||| |||||||||||||||||| |
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| T |
35233035 |
agagctacaaactttagagtaagaacttatgcagaaataaacagtaatagaatctcgcagaaaaatggcgatgaaattttttgtttttacaagggggtaa |
35233134 |
T |
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| Q |
213 |
tttgaaaatattcctgtcattggagatgttgaacttacataatgcagcactattcataagttttttggtgtttccgttttccctcacaacatttcaatat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||| ||||||||||| ||||||||||||||||| |
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| T |
35233135 |
tttgaaaatattcctgtcattggagatgttgaacttacataatgcagcgcgtttcataaatttgttggtgcttccgttttccttcacaacatttcaatat |
35233234 |
T |
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| Q |
313 |
acagacacttattttatggttggtcgttagctattctgtccaagtttgttggatgagtacttgt |
376 |
Q |
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| T |
35233235 |
aaagacacttattttatggttggtcattagctattctgtccaagtttgttggatgagtaattgt |
35233298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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