View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_36 (Length: 367)
Name: NF8479_2D_low_36
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 2031760 - 2032094
Alignment:
| Q |
18 |
gtaatcatgttttcgctcccttttttcttttcaagatcgtgataatatttttctggaacaaaaatgttcattgtcatcattcnnnnnnnnng-ttcattg |
116 |
Q |
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| T |
2031760 |
gtaatcatgttttcgctcccttttttcttttcaagatcgtgatagtatttttctggaacaaaaatgttcattgtcatcattcaaaaaaaaaggttcattg |
2031859 |
T |
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| Q |
117 |
tcatctcattcaagaaaaatcttctaannnnnnncttt-aaagacaccacatttttctcaccctcaatataagatattgattttttcaattaattacaag |
215 |
Q |
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| T |
2031860 |
tcatctcattcaagaaaaatcttctaactttttttttttaaagacaccgcatttt-ctcaccctcaatataagatattgattttttcaattaattacaag |
2031958 |
T |
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| Q |
216 |
atcacgctttgaattaactatagaaaaaccttagttgcatcacagcaaaacaaatccaacaaatcatcacaaaacataaatttcttattaatgatcattt |
315 |
Q |
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| T |
2031959 |
atcacactttgaattaactatagaaaaaccttagttgcatcacagcaaaaccaatccaacaaatcatcacaaaacataaatttcttattaatgatcattt |
2032058 |
T |
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| Q |
316 |
tcttcacaaaatcaagttcctcaacaactagttcat |
351 |
Q |
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| T |
2032059 |
tcttcacaaaatcaagttcctcaacaactagttcat |
2032094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 29839763 - 29839687
Alignment:
| Q |
268 |
aatccaacaaatcatcacaaaacataaatttcttattaatgatcattttcttcacaaaatcaagttcctcaacaact |
344 |
Q |
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|||||||||||||||||| | |||||||||| ||| ||| | |||||||||||||||||||||||||||||| |
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| T |
29839763 |
aatccaacaaatcatcacgggaggtaaatttctttttagtgaaaaagttcttcacaaaatcaagttcctcaacaact |
29839687 |
T |
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