View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_2D_low_38 (Length: 349)

Name: NF8479_2D_low_38
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_2D_low_38
NF8479_2D_low_38
[»] chr7 (2 HSPs)
chr7 (53-323)||(29675975-29676258)
chr7 (74-116)||(48853860-48853902)
[»] chr6 (2 HSPs)
chr6 (53-324)||(7054704-7054985)
chr6 (63-139)||(15121353-15121429)
[»] chr8 (1 HSPs)
chr8 (21-225)||(3498642-3498856)
[»] chr3 (1 HSPs)
chr3 (53-152)||(53944675-53944773)
[»] chr1 (1 HSPs)
chr1 (66-142)||(12017558-12017635)
[»] chr2 (1 HSPs)
chr2 (66-142)||(24138619-24138695)
[»] chr4 (1 HSPs)
chr4 (74-104)||(35904572-35904602)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 53 - 323
Target Start/End: Original strand, 29675975 - 29676258
Alignment:
Q  53 ttgaagaacctaatattcagtcatagatc--aatagatacaaattatagcatataattagtagtaaagaaatgataagaaattgtgtaccttatataatt 150  Q
    |||||||| |||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29675975 ttgaagaatctaatacttagtcatagatctcaatagatacaaattatagcatataattagtagtaaagaaaggataagaaattgtgtaccttatataatt 29676074  T
Q  151 ggttggtgattggctattaagatcctgctagag-----attagagaaagaggttaaggttgagagagtcttctctcccttact-atgctgttagaatgag 244  Q
    ||||||||||||||||||||||||||| |||||     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29676075 ggttggtgattggctattaagatcctgttagagaagccattagagaaagaggttaaggttgagagagtcttctctcccttactgatgctgttagaatgag 29676174  T
Q  245 a-ttccttcaagcagttatctgacctaa---ga-agtcagtatatataaacactagtagggaaagggacctctcaacaggctta 323  Q
    | | |||||||||||||||||||||| |   || ||||||||||||||  ||| | |||||||||||||||||||||| |||||    
T  29676175 agtgccttcaagcagttatctgacctgatgggatagtcagtatatatacgcaccaatagggaaagggacctctcaacatgctta 29676258  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 48853902 - 48853860
Alignment:
Q  74 catagatcaatagatacaaattatagcatataattagtagtaa 116  Q
    ||||||||| ||||||||||||||||||||| || ||||||||    
T  48853902 catagatcactagatacaaattatagcatatcatcagtagtaa 48853860  T

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Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 53 - 324
Target Start/End: Original strand, 7054704 - 7054985
Alignment:
Q  53 ttgaagaacctaatattcagtcatagatcaatagatacaaattatagcatataattagtagtaaagaaatgataagaaattgtgtaccttatataattgg 152  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7054704 ttgaagaatctaatactcagtcatagatgaatagatacaaattatagcatataattagtagtaaagaaaggataagaaattgtgtaccttatataattgg 7054803  T
Q  153 ttggtgattggctattaagatcctgctagag-----attagagaaagaggttaaggttgagagagtcttctctcccttact-atgctgttagaatgaga- 245  Q
    ||||||||||||||||||||||||| |||||     ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||     
T  7054804 ttggtgattggctattaagatcctgttagagaagccattagagaaagaggttaaggttgagagagtcttctctcccttagtgatgctgttagaatgagag 7054903  T
Q  246 ttccttcaagcagttatctgacctaag---aagtcagtatatataaacactagtagggaaagggacctctcaacaggcttaa 324  Q
    |  |||||||||||||||||||  | |    ||| ||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  7054904 tgtcttcaagcagttatctgactgatgggatagtaagtatatataagcaccagtaggaaaagggacatctcaacaggcttaa 7054985  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 15121353 - 15121429
Alignment:
Q  63 taatattcagtcatagatcaatagatacaaattatagcatataattagtagtaaagaaatgataagaaattgtgtac 139  Q
    ||||| |||||||||||| ||||||||||||||||| ||| ||||||||| |||||||   |||| |||||||||||    
T  15121353 taatactcagtcatagataaatagatacaaattataacatgtaattagtaataaagaaggaataaaaaattgtgtac 15121429  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 3498642 - 3498856
Alignment:
Q  21 atagccataactgtatctatttggct----taccaattgaagaacctaatattcagtcatagatcaatagatacaaattatagcatataattagtagtaa 116  Q
    |||||||||| |||||||||||||||    |||||||||||||| |||||| |||  ||||||||||||||||||| |||||||||||||||||||| ||    
T  3498642 atagccataattgtatctatttggctctgataccaattgaagaatctaatactcaaccatagatcaatagatacaagttatagcatataattagtagaaa 3498741  T
Q  117 agaaatgataagaaattgtgtaccttatataattggttggtgattggctattaagatcctgctagaga------ttagagaaagaggttaaggttgagag 210  Q
    | ||   |||| ||||||||||||||||||||||||||| |||||||  ||||||| |||| ||||||       |||| |||||||||| |||||||||    
T  3498742 aaaagaaataataaattgtgtaccttatataattggttgatgattgggcattaagaacctgttagagaaaccatgtagaaaaagaggttagggttgagag 3498841  T
Q  211 agtcttctctccctt 225  Q
    |||||||||||||||    
T  3498842 agtcttctctccctt 3498856  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 53944675 - 53944773
Alignment:
Q  53 ttgaagaacctaatattcagtcatagatcaatagatacaaattatagcatataattagtagtaaagaaatgataagaaattgtgtaccttatataattgg 152  Q
    |||||||| |||||  |||| |||||||||||| |||||||| ||| |||| ||||||||| ||| |||  ||||| |||| ||||||||||||||||||    
T  53944675 ttgaagaatctaatgctcagccatagatcaatatatacaaatcataacatagaattagtagcaaa-aaagaataaggaattatgtaccttatataattgg 53944773  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 12017558 - 12017635
Alignment:
Q  66 tattcagtcatagatcaatagatacaaattatagcatataattagtagtaaagaaatg-ataagaaattgtgtacctt 142  Q
    |||| |||||||||||| |||||| || ||||||||||| ||  |||||||||||| | |||||||||| ||||||||    
T  12017558 tatttagtcatagatcactagatataagttatagcatatcatcggtagtaaagaaaggaataagaaattatgtacctt 12017635  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 24138695 - 24138619
Alignment:
Q  66 tattcagtcatagatcaatagatacaaattatagcatataattagtagtaaagaaatgataagaaattgtgtacctt 142  Q
    |||| |||||| ||||| ||||||||||||||||||||| || ||||  || ||||  |||||| ||||||||||||    
T  24138695 tatttagtcatggatcactagatacaaattatagcatatcatcagtaacaaggaaagaataagagattgtgtacctt 24138619  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 35904572 - 35904602
Alignment:
Q  74 catagatcaatagatacaaattatagcatat 104  Q
    |||||||||||||||||||||||||||||||    
T  35904572 catagatcaatagatacaaattatagcatat 35904602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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