View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_47 (Length: 296)
Name: NF8479_2D_low_47
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 41917737 - 41918006
Alignment:
| Q |
20 |
tcatgactatacagaagatgttgaattatgtccactagggtctttaaatnnnnnnnggaagaatagccaaaatgatgttaatgatcagccgcaaaaaaca |
119 |
Q |
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| T |
41917737 |
tcatgactatacagaagatgttgaattatatccactagggtctttaaataaaaaaaggaagaatagccaaaatgatgttaatgatcagccgcaaaaaaca |
41917836 |
T |
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| Q |
120 |
cctaaaaggaagaaatatcaacctaaagtggtgtctccgtatccagagaaattaaagaaattccatcccggaagcaacggcactccaaaaccttcaactc |
219 |
Q |
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| T |
41917837 |
gccaaaaggaagaaatatcaacctaaagtggtgtctccgtatccagagaaattaaagaaattccatcccggaagcaacggcactccaaaaccatcaactc |
41917936 |
T |
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| Q |
220 |
cgaagcagaggaaaagttatgttagaaagaccgccaacactcatgaaaacaacactccaaaaccttcaac |
289 |
Q |
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| T |
41917937 |
cgaagcagaggaaaagttatgttagaaagaccgccaacactcatgacaacaacactccaaaaccttcaac |
41918006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 41917989 - 41918045
Alignment:
| Q |
200 |
cactccaaaaccttcaactccgaagcagaggaaaagttatgttagaaagaccgccaa |
256 |
Q |
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| T |
41917989 |
cactccaaaaccttcaactccgaaacagaggaaaagttatgttagaaagactgccaa |
41918045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 1686865 - 1686914
Alignment:
| Q |
200 |
cactccaaaaccttcaactccgaagcagaggaaaagttatgttagaaaga |
249 |
Q |
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| T |
1686865 |
cactcccaaacctgtaactccgaagcagaggaaaagttatgttagaaaga |
1686914 |
T |
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