View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_2D_low_49 (Length: 288)

Name: NF8479_2D_low_49
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_2D_low_49
NF8479_2D_low_49
[»] chr5 (2 HSPs)
chr5 (118-288)||(40827917-40828090)
chr5 (19-47)||(40827818-40827846)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 40827917 - 40828090
Alignment:
Q  118 gacatcacatattaatgccttacacgtgat---gatggttgttaatgatatacttctaattatgtagcagctagctctaccctctaacgatctaattctg 214  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40827917 gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctctaccctctaacgatctaattctg 40828016  T
Q  215 gaaactcacctattttctttatagataataagttacattctacgtattaatgtctttcacatcacatattactc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40828017 gaaactcacctattttctttatagataataagttacattctacgtattaatgtctttcacatcacatattactc 40828090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 40827818 - 40827846
Alignment:
Q  19 caagttaaaatgaaaaatgctacctacaa 47  Q
    |||||||||||||||||||||||||||||    
T  40827818 caagttaaaatgaaaaatgctacctacaa 40827846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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