View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_low_53 (Length: 267)
Name: NF8479_2D_low_53
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 9408219 - 9408452
Alignment:
| Q |
21 |
acaagtcactttaatgcaactcattattatagtatgataattgtagttttgtactttctacgtattatagtattctagttctatacttactacgtatccg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9408219 |
acaagtcactttaatgcaactcattattatagtatgataattgtagttttgtactttctacgtattatagtattctagttctatacttactacgtatccg |
9408318 |
T |
|
| Q |
121 |
aaatttaattttcattagtgcatcagcattacgtagtgaatgatgtaagtaacttttaatcaagttcattcacatggtcttatgagaagcttcgtgaaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9408319 |
aaatttaattttcattagtgcatcagcattacgtagtgaatgatgtaagtaacttttaatcaagttcattcacattgtcttatgagaagcttcgtgaaag |
9408418 |
T |
|
| Q |
221 |
cttccgtctttttattatgctgtgattcttgttc |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
9408419 |
cttccatctttttattatgctgtgattcttgttc |
9408452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University