View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_56 (Length: 262)
Name: NF8479_2D_low_56
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_56 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 15449690 - 15449929
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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| T |
15449690 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggaaattatattcacaaggtctatagttcatgggaaga |
15449789 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtagg |
222 |
Q |
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| T |
15449790 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagtttcaggcggtaaatagttcattgatgatcgatgtgatagtggtagg |
15449889 |
T |
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| Q |
223 |
tttaccattgatgctgctaagtatggtaacgaggcaaggt |
262 |
Q |
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| T |
15449890 |
tttaccattgatgctgctaagtatggtaacgtggcaaggt |
15449929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 15488567 - 15488806
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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| T |
15488567 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
15488666 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtagg |
222 |
Q |
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| T |
15488667 |
ggattcatatgtggttgatagtaaggagatgagttcatatcaacccttagaagcttcgggcggtaaagagggcgttgatgatcgatgtgatagtggtagg |
15488766 |
T |
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| Q |
223 |
tttaccattgatgctgctaagtatggtaacgaggcaaggt |
262 |
Q |
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| T |
15488767 |
tttaccattgatgctgctaagtatggtaacgtggcaaggt |
15488806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 15430172 - 15430411
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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| T |
15430172 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
15430271 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtagg |
222 |
Q |
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| T |
15430272 |
ggattcatatgtggttgatagtaaggagatgaattcatatcaacccttagaagcttcgggcggtaaagagggcgttgatgatcgatgtgatagtggtagg |
15430371 |
T |
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| Q |
223 |
tttaccattgatgctgctaagtatggtaacgaggcaaggt |
262 |
Q |
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| T |
15430372 |
tttaccattgatgctgctaagtatggtaacgtggcaaggt |
15430411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 16943261 - 16943500
Alignment:
| Q |
23 |
agattattgaagatgaggaagctttgaaaaaggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaaga |
122 |
Q |
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|||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
16943261 |
agattattgaagatgaggaagctttgaagatagttgatgatgatgagtaattatttaatattgtcgattatattcacaaggtctatagttcaagggaaga |
16943360 |
T |
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| Q |
123 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtagg |
222 |
Q |
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| T |
16943361 |
ggattcatatatggttgatagtaaggagatgagttcatatcaacccgtagaagcttcaggcagtaaagaggtcattgatgatcgatgtgatagtggtagg |
16943460 |
T |
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| Q |
223 |
tttaccattgatgctgctaagtatggtaacgaggcaaggt |
262 |
Q |
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| T |
16943461 |
tttaacattgatgccgctaagtatggtaacgtgggaaggt |
16943500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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