View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8479_2D_low_6 (Length: 603)
Name: NF8479_2D_low_6
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_6 |
 | |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 16944074 - 16943476
Alignment:
| Q |
19 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattacactgttgtaccaatctattgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| || |
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|
| T |
16944074 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattactctgt---accaatctattgtttctg |
16943978 |
T |
|
| Q |
118 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcatagatggagtcttaattgtttccacattt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||| |
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|
| T |
16943977 |
ttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcatagatggaggcttaattgcttctacattt |
16943878 |
T |
|
| Q |
218 |
atttttccttccccttcatctgctgaaacagcacggctt------------------ttataatttaaaaaatatgagcaagacagaagaaaacgaattt |
299 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
16943877 |
atttttccttccccttcatctactgaaacagcacggcttgaatatcacctattagagttataattcaaaaaatatgagcaagacagaagaaaacgaattt |
16943778 |
T |
|
| Q |
300 |
atgagcaagacagaatgagagggactaagtaaaaaagaattacctcatcaatacagtcgacggatgcattcagaagctccacaatatagcatgctttcgt |
399 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||| ||| ||||||| |
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|
| T |
16943777 |
atgagcaagacataatgagagggccaaagtaaaaaagaattaactcatcaatacagtcgatggatgcatgcagaagcttcacaataa--catactttcgt |
16943680 |
T |
|
| Q |
400 |
ctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatg |
499 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16943679 |
ctttaaatttccatttgaatcagtcacttgattgatcttgtaattgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatg |
16943580 |
T |
|
| Q |
500 |
atgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactatggttgataaaccttgcctcgttaccatact |
599 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |
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|
| T |
16943579 |
atttgtggaatccttggaacatcatcatcgtaaagaacatttcgagcaaacaaattgggagagcaactatggttgataaaccttcccacgttaccatact |
16943480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 15450510 - 15449905
Alignment:
| Q |
19 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattacactgttgtaccaatctattgtttttg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
15450510 |
atcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaagaatgtattactcaagtaattatactgttgtaccaatctattgtttctg |
15450411 |
T |
|
| Q |
118 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcatagatggagtcttaattgtttccacattt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||| |
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|
| T |
15450410 |
ttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcatagatggaggcttaattgcttccaaattt |
15450311 |
T |
|
| Q |
218 |
atttttccttccccttcatctgctgaaacagcacggctt------------------ttataatttaaaaaatatgagcaagacaga--agaaaacgaat |
297 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||| |
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|
| T |
15450310 |
atttttccttccccttcacctactgaaacagcacggcttgaataccacctattagagttataattcaaaaaatttgagcaagacagagaagaaaacgaat |
15450211 |
T |
|
| Q |
298 |
ttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatc--aatacagtcgacggatgcattcagaagctccacaatatagcatgctt |
395 |
Q |
| |
|
|||| ||||||||| ||| |||||| | |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15450210 |
ttataagcaagacaaaataagagggccaaagtaaaaaacaattacctcatctcaatacagtcgacggatgcattcagaagctccacaataa--catgctt |
15450113 |
T |
|
| Q |
396 |
tcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatag |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15450112 |
tcgtctttaaatttccatttgaatcaatcacttgatcgatcttttaattgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatag |
15450013 |
T |
|
| Q |
496 |
catgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactatggttgataaaccttgcctcgttacca |
595 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
15450012 |
catgatgtgtggaatcctcagatcatcatcatcgtaaagaacatttcgagcaaacaaattgggagaacaactatggttgataaaccttgccacgttacca |
15449913 |
T |
|
| Q |
596 |
tacttagc |
603 |
Q |
| |
|
|||||||| |
|
|
| T |
15449912 |
tacttagc |
15449905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 272 - 603
Target Start/End: Complemental strand, 15489113 - 15488782
Alignment:
| Q |
272 |
tatgagcaagacaga--agaaaacgaatttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatcaatacagtcgacggatgcatt |
369 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15489113 |
tatgagcaagacagagaagaaaataaatttatgagcaagacagaatgagagggccaaagtaaaaaagaattacctcatcaataaagtcgacggatgcatt |
15489014 |
T |
|
| Q |
370 |
cagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatg |
469 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15489013 |
cagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatcgcttgatcgatcttgtaattgtaatctaaagtcagctctttcatg |
15488916 |
T |
|
| Q |
470 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactat |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15488915 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcatcgtaaagaacatttcgaacaaacaaattgggagaacaactat |
15488816 |
T |
|
| Q |
570 |
ggttgataaaccttgcctcgttaccatacttagc |
603 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
15488815 |
ggttgataaaccttgccacgttaccatacttagc |
15488782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 272 - 603
Target Start/End: Complemental strand, 15430718 - 15430387
Alignment:
| Q |
272 |
tatgagcaagacaga--agaaaacgaatttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatcaatacagtcgacggatgcatt |
369 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15430718 |
tatgagcaagacagagaagaaaataaatttatgagcaagacagaatgagagggccaaagtaaaaaagaattacctcatcaatatagtcgacggatgcatt |
15430619 |
T |
|
| Q |
370 |
cagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatg |
469 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
15430618 |
cagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatctcttgatcgatcttttaattgtaatctaaagtcagctctttcatg |
15430521 |
T |
|
| Q |
470 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactat |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15430520 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcatcgtaaagaacatttcgaacaaacaaattgggagaacaactat |
15430421 |
T |
|
| Q |
570 |
ggttgataaaccttgcctcgttaccatacttagc |
603 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
15430420 |
ggttgataaaccttgccacgttaccatacttagc |
15430387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 15489445 - 15489207
Alignment:
| Q |
19 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattacactgttgtaccaatctattgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15489445 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattacactgttgtaccaatctattgtttctg |
15489346 |
T |
|
| Q |
118 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcatagatggagtcttaattgtttccacattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15489345 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcatagatggaggcttaattgcttccacattt |
15489246 |
T |
|
| Q |
218 |
atttttccttccccttcatctgctgaaacagcacggctt |
256 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15489245 |
atttttccttccccttcatctactgaaacagcacggctt |
15489207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 15431050 - 15430812
Alignment:
| Q |
19 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattacactgttgtaccaatctattgtttttg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15431050 |
atcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaataatgtattactcaagtaattacactgttgtaccaatctattgtttctg |
15430951 |
T |
|
| Q |
118 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcatagatggagtcttaattgtttccacattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15430950 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcatagatggaggcttaattgcttccacattt |
15430851 |
T |
|
| Q |
218 |
atttttccttccccttcatctgctgaaacagcacggctt |
256 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15430850 |
atttttccttccccttcatctactgaaacagcacggctt |
15430812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 15557486 - 15557260
Alignment:
| Q |
19 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnn-tgtattactcaagtaattacactgttgtaccaatctattgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15557486 |
atcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattacactgttgtaccaatctattgtttctg |
15557387 |
T |
|
| Q |
118 |
ttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcatagatggagtcttaattgtttccacattt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15557386 |
ttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcatagatggaggcttaattgcttccacattt |
15557287 |
T |
|
| Q |
218 |
atttttccttccccttcatctgctgaa |
244 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
15557286 |
atttttccttccccttcatctactgaa |
15557260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 546 - 586
Target Start/End: Complemental strand, 22475708 - 22475668
Alignment:
| Q |
546 |
caaacaaattgggagaacaactatggttgataaaccttgcc |
586 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
22475708 |
caaacaaattaggagaacaactatgattgataaatcttgcc |
22475668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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