View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_62 (Length: 230)
Name: NF8479_2D_low_62
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 36324357 - 36324553
Alignment:
| Q |
19 |
ccaagcccatggaaactatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactcttt |
118 |
Q |
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| T |
36324357 |
ccaagcccatggaaactatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactcttt |
36324456 |
T |
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| Q |
119 |
gcttagcacagcttcaaaccttttcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccagcatccttaccaat |
215 |
Q |
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| T |
36324457 |
gcttagcacagcttcaaaccttttcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccagcatccttaccaat |
36324553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 36331624 - 36331814
Alignment:
| Q |
25 |
ccatggaaactatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctttgcttag |
124 |
Q |
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| T |
36331624 |
ccatggaaactatgcagagttacacaagtagaaaatgccaaaataatcctaagcatgattccaatattctgttgcacaatcataatgactctttgcttag |
36331723 |
T |
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| Q |
125 |
cacagcttcaaaccttttcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccagcatccttaccaat |
215 |
Q |
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| T |
36331724 |
cacagcttcaaaccttctcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccaccatccttgccaat |
36331814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 5459620 - 5459807
Alignment:
| Q |
20 |
caagcccatggaaactatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctttg |
119 |
Q |
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|||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||| | ||| |||||| |||||||| |||||||| ||||| |
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| T |
5459620 |
caagtccatggaaactttgcagggttacacaagtagaaaatgccaaaatccttctcagcatggttccaatattctgttgtacaattataatgaccctttg |
5459719 |
T |
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| Q |
120 |
cttagcacagcttcaaaccttttcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccagcatcc |
207 |
Q |
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| T |
5459720 |
cctagctcaactccaaaccttttcaatcgaacaaggctacaccatggacacaaaagtcaccaaacattttcacatcccacccgcatcc |
5459807 |
T |
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