View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_2D_low_70 (Length: 212)
Name: NF8479_2D_low_70
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_2D_low_70 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 4946869 - 4946676
Alignment:
| Q |
1 |
tcaatatttatttttatgaaaatcaatnnnnnnncgtttgnnnnnnngcgatttttgaggtttattattcgtactgaataacactgctcaacatttataa |
100 |
Q |
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| T |
4946869 |
tcaatatttatttttatgaaaatcaataaaaaaacgtttgtttttgtgcgatttttgaggtttattattcgtactgaataacactgctcaacatttataa |
4946770 |
T |
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| Q |
101 |
actgattatcttctacattgtgtcaaaagttttgagtaaattaatatcctcctatttaatccttccaattaatcaaaagatcaaagtataaaac |
194 |
Q |
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| T |
4946769 |
actgattatcttctacattctgtcaaaagttttgagtaaattaatatcctcctatttaatccttccaattaatcaaaagatcaaagtataaaac |
4946676 |
T |
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Target: scaffold0361 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 11492 - 11346
Alignment:
| Q |
48 |
gcgatttttgaggtttattattcgtactgaataacactgctcaacatttataaactgattatcttctacattgtgtcaaaagttttgagtaaattaatat |
147 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| || ||||||| |||||||||||||||| |
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| T |
11492 |
gcgatttgtgaggtttattattcgtactgaataacactgctcaatatttataagctgatcatcttctacattctggcaaaagtcttgagtaaattaatat |
11393 |
T |
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| Q |
148 |
cctcctatttaatccttccaattaatcaaaagatcaaagtataaaac |
194 |
Q |
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| T |
11392 |
cctcctatttaatccttccaattaatcaaaagatcaaagtataaaac |
11346 |
T |
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