View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_2D_low_73 (Length: 206)

Name: NF8479_2D_low_73
Description: NF8479_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_2D_low_73
NF8479_2D_low_73
[»] chr6 (14 HSPs)
chr6 (19-206)||(33272174-33272362)
chr6 (23-204)||(33304858-33305040)
chr6 (41-204)||(33399347-33399511)
chr6 (37-195)||(33359108-33359267)
chr6 (19-204)||(33057933-33058119)
chr6 (23-195)||(9167147-9167320)
chr6 (23-204)||(31562339-31562521)
chr6 (46-195)||(33388467-33388617)
chr6 (28-200)||(33410342-33410515)
chr6 (23-204)||(33263009-33263191)
chr6 (42-195)||(33644127-33644281)
chr6 (68-191)||(33285965-33286089)
chr6 (41-205)||(28869715-28869879)
chr6 (140-204)||(33399519-33399583)
[»] chr2 (1 HSPs)
chr2 (28-195)||(17440356-17440524)
[»] chr4 (9 HSPs)
chr4 (38-187)||(31498586-31498736)
chr4 (24-204)||(31157586-31157767)
chr4 (27-183)||(31027950-31028107)
chr4 (121-183)||(31526898-31526960)
chr4 (24-119)||(31032510-31032605)
chr4 (23-181)||(31148683-31148842)
chr4 (69-204)||(31503682-31503818)
chr4 (24-119)||(31017926-31018021)
chr4 (127-204)||(31478529-31478606)
[»] scaffold1408 (1 HSPs)
scaffold1408 (68-204)||(1072-1209)
[»] scaffold0428 (1 HSPs)
scaffold0428 (68-204)||(6818-6955)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 33272174 - 33272362
Alignment:
Q  19 cagacttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33272174 cagacttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgct 33272273  T
Q  119 t-gtagatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttacacc 206  Q
    |  |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33272274 tactagatttttgcaattttttaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttacacc 33272362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 33304858 - 33305040
Alignment:
Q  23 cttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-t 121  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||  ||||||||||||||||||||||| ||||   |||||||| ||||||||||||  |    
T  33304858 cttcttcaaatgcattggatttttaaacactttggaacatccatacatatttagatcttcaagagagctaagactgaatatgttattgggtatgcttact 33304957  T
Q  122 agatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  33304958 agatttttgcattcatataaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaaggtttataca 33305040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 33399347 - 33399511
Alignment:
Q  41 attgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgt-agatttttgcaatcttct 139  Q
    ||||||||||||||| ||||| |||  ||||||||||| ||||||||||| |||||| |||||||||||||||||||||   |||||||  ||||||| |    
T  33399347 attgttaaacactttggaacagccattcatatttagatattcaagagagctaagatcgaatatgttgttgggtatgcttaccagattttcacaatctttt 33399446  T
Q  140 aaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33399447 acattcaagcaaacaagctttcttagaagtccaatagatggatccaactccacaagttttttaca 33399511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 33359108 - 33359267
Alignment:
Q  37 ttggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatttttgcaatc 135  Q
    |||||| || ||||||||| |||||||| | ||||||| ||||||||||||||| |||| |||||||||||||||||||||||  |||||||||| ||||    
T  33359108 ttggatagtcaaacactttggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatc 33359207  T
Q  136 ttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaag 195  Q
    || ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33359208 ttttaagttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaag 33359267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 33057933 - 33058119
Alignment:
Q  19 cagacttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgct 118  Q
    |||||||| ||||| || |||| |||||||| ||||| ||||| |||| ||||||||| | || |||||||| |||| | ||||||||||||||||||||    
T  33057933 cagacttcatcaaacgccttgggttgttaaatactttggaacagccacacatatttaggtattgaagagagctaagaccgaatatgttgttgggtatgct 33058032  T
Q  119 tg-tagatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
       |||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  33058033 aactagacttttgcaatcttttaggttcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggtttataca 33058119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 9167147 - 9167320
Alignment:
Q  23 cttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgt- 121  Q
    ||||||||||||| ||| || || ||||| ||| ||||| |||| |||||||||||||| |||||||| |||| | ||||||||||||||||| ||| |     
T  9167147 cttcttcaaatgccttgaatcgtcaaacaatttggaacagccacacatatttagatctttaagagagctaagaccgaatatgttgttgggtattcttatt 9167246  T
Q  122 agatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaag 195  Q
    ||||||   ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9167247 agatttccacaatcttttacattcaagtaaacaagctttcttagaagtccaagagatggatccaactccacaag 9167320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 31562521 - 31562339
Alignment:
Q  23 cttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgc-ttgt 121  Q
    ||||||||||||||||||||  | ||||||||| ||||| |||||||||||||||||||||||||||| ||||   ||||||||||||||||||| ||      
T  31562521 cttcttcaaatgcattggatcatcaaacactttggaacagccacgcatatttagatcttcaagagagctaagactgaatatgttgttgggtatgctttcc 31562422  T
Q  122 agatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
    ||| | | |||  | |||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||| ||| ||||    
T  31562421 agactatagcagccgtctaaattcaagtaagaaagcttttctagaagtccaatagatggatccaactccacaaggtttataca 31562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 33388467 - 33388617
Alignment:
Q  46 taaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatttttgcaatcttctaaatt 144  Q
    ||||| |||| ||||||||||  |||||||||||||||||||||| |||| |  ||||||||||||||||||||  |||||||  |||| |||| |||||    
T  33388467 taaacgctttggaacaaccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaatt 33388566  T
Q  145 caagtaaacaagctttcttagaagtccaatagatggatccaactccacaag 195  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  33388567 caagtaaacaagctttcttagaagtccaatagatggatctaactcaacaag 33388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 33410342 - 33410515
Alignment:
Q  28 tcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatt 126  Q
    |||||| | ||| ||||||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||   |||||| ||||||||||||||  || |||    
T  33410342 tcaaattccttgaattgttaaacactttggaacagccacacatatatagatcttcaagagagctaagacagaatatgctgttgggtatgcttactaaatt 33410441  T
Q  127 tttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttt 200  Q
    | ||||||  || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  33410442 tatgcaatagtccaaattcaagtaaacaagctttcttagaagtccaatcgatgaatccaactccacaagttttt 33410515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 33263009 - 33263191
Alignment:
Q  23 cttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgta 122  Q
    ||||| ||| || ||||| |||||||||||||| ||||| | ||  ||||||||||||||||||||||  ||| | |||||| |||| |||||||||  |    
T  33263009 cttctccaagtgtattggtttgttaaacactttggaacagcaactgatatttagatcttcaagagagcccagaccgaatatggtgttcggtatgcttaca 33263108  T
Q  123 -gatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
     | || | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  33263109 aggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtaca 33263191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 33644281 - 33644127
Alignment:
Q  42 ttgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgt-agatttttgcaatcttcta 140  Q
    |||||||||||||| |||||||||| || ||||||||||| |||||||| ||||   |||||||||||||||||||||   |||||||  ||||||| ||    
T  33644281 ttgttaaacactttggaacaaccacccaaatttagatcttgaagagagctaagactgaatatgttgttgggtatgcttaccagattttcacaatctttta 33644182  T
Q  141 aattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaag 195  Q
     ||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  33644181 cattcaagtaaacaagctttcttaaaagtccaatagataaatccaactccacaag 33644127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 33285965 - 33286089
Alignment:
Q  68 catatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgta-gatttttgcaatcttctaaattcaagtaaacaagctttcttaga 166  Q
    ||||| ||||| || ||||||||  ||| | |||||||||||||||||||||  | ||||||||||||||| |||||||||||||||||| |||||||||    
T  33285965 catatatagatatttaagagagcttagaccgaatatgttgttgggtatgcttacaagatttttgcaatcttttaaattcaagtaaacaaggtttcttaga 33286064  T
Q  167 agtccaatagatggatccaactcca 191  Q
    |||||||||||||||||||||||||    
T  33286065 agtccaatagatggatccaactcca 33286089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 28869879 - 28869715
Alignment:
Q  41 attgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatttttgcaatcttct 139  Q
    ||||||||||||||| ||||| |||  ||||||||||||||||||||||  |||| | ||||||||||||| ||  |||  || ||| | |||| | | |    
T  28869879 attgttaaacactttggaacagccagacatatttagatcttcaagagagttaagaccgaatatgttgttgg-tacacttactatattatagcaaccgttt 28869781  T
Q  140 aaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttacac 205  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  28869780 aaattcaagtatacaagctttcttagaagtccaatagatggatccaactcaacaaggtttatacac 28869715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 33399519 - 33399583
Alignment:
Q  140 aaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  33399519 aaattcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggttcttaca 33399583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 17440524 - 17440356
Alignment:
Q  28 tcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatt 126  Q
    |||||||| ||| |||  ||||||||||  ||||||  ||||||||||||| ||||||||||| ||||   |||||||||||||||||||||  ||||||    
T  17440524 tcaaatgccttgaatttgtaaacactttgaaacaacatcgcatatttagatattcaagagagctaagacagaatatgttgttgggtatgcttactagatt 17440425  T
Q  127 tttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaag 195  Q
     | |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  17440424 atagcaatcttttaagttcaagtaaacaagctttcttagaagtccaattgatggatccaattccacaag 17440356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 31498736 - 31498586
Alignment:
Q  38 tggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgta-gatttttgcaatct 136  Q
    |||| ||||||||||||  ||||| |||| |||||||||||||| |||| |||  ||| |||||||||||||||||||||||  | |||| |||||||||    
T  31498736 tggaatgttaaacacttcggaacacccacacatatttagatctttaagaaagctgagaccaaatatgttgttgggtatgcttacaagattcttgcaatct 31498637  T
Q  137 tctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaac 187  Q
    | |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  31498636 tttaaattcaaggaaacaatctttcttagaagtccaatagatggatccaac 31498586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 31157586 - 31157767
Alignment:
Q  24 ttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-ta 122  Q
    |||||||||||| ||||||||||||||||||| ||||| ||    | |||||||| || ||||||||  ||| ||| ||||||||| |||||||||  ||    
T  31157586 ttcttcaaatgccttggattgttaaacactttggaacacccggaaagatttagatatttaagagagctgagaccaagtatgttgttcggtatgcttacta 31157685  T
Q  123 gatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
    |||||||||||||||  || |||| | ||||||||||||||||||  ||||| |||||||| | || |||||| ||| ||||    
T  31157686 gatttttgcaatctttcaatttcatgaaaacaagctttcttagaaccccaattgatggatcaatctgcacaagctttataca 31157767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 31027950 - 31028107
Alignment:
Q  27 ttcaaatgcattggattgttaaacactttagaacaaccacgcat-atttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgt-aga 124  Q
    ||||||||| ||| |||| |||||||||| ||||| ||| | |  |||||||| || |||||||   ||| ||||||||||||| ||||||||| | |||    
T  31027950 ttcaaatgccttgtattggtaaacactttggaaca-ccaggaaagatttagatatttaagagaggtgagaccaaatatgttgttaggtatgcttattaga 31028048  T
Q  125 tttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatc 183  Q
    |||||||||| ||  || |||||| | ||||||||||| ||||| ||||||||||||||    
T  31028049 tttttgcaatttttcaagttcaagaatacaagctttctcagaagaccaatagatggatc 31028107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 31526898 - 31526960
Alignment:
Q  121 tagatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatc 183  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||  | ||||||||||||    
T  31526898 tagatttttgcaatcttccaaattcaagtaaacaagttttcttagaacactaatagatggatc 31526960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 31032510 - 31032605
Alignment:
Q  24 ttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgctt 119  Q
    |||||||| ||||||||||||||||||||||| ||||| ||    | |||||||| || |||||||   ||| |||||||||||||||||||||||    
T  31032510 ttcttcaattgcattggattgttaaacactttggaacacccggaaagatttagatatttaagagaggtgagaccaaatatgttgttgggtatgctt 31032605  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 31148683 - 31148842
Alignment:
Q  23 cttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgt- 121  Q
    |||| |||| ||| ||||||| ||||||||||| ||||| ||    | |||||||  |||||||||||  ||| ||||||| || || |||||  || |     
T  31148683 cttcctcaattgccttggattcttaaacactttggaacaccccgaaagatttagacattcaagagagctgagaccaaatatattttttggtattattatt 31148782  T
Q  122 agatttttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatgga 181  Q
    || |||||||||||||  ||||||| ||||||||||||||||||||  ||||||||||||    
T  31148783 agttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatgga 31148842  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 31503818 - 31503682
Alignment:
Q  69 atatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttgt-agatttttgcaatcttctaaattcaagtaaacaagctttcttagaa 167  Q
    ||||||||||| |||||| | |  ||| ||||||||||| || ||| |||| | | || |||||| ||||  || |||||||||||||||||| ||||||    
T  31503818 atatttagatcatcaagacaactgagaccaaatatgttgctgagtaggcttattatatgtttgcagtctttcaagttcaagtaaacaagctttgttagaa 31503719  T
Q  168 gtccaatagatggatccaactccacaagatttttaca 204  Q
    | |||||||||||||| | || |||||| ||| ||||    
T  31503718 gaccaatagatggatctatctgcacaagttttataca 31503682  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 31017926 - 31018021
Alignment:
Q  24 ttcttcaaatgcattggattgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgctt 119  Q
    |||||||||||| |||||| |||||||||||| ||||| |||   | |||||||| || |||||||   ||| |||||||| ||||||||||||||    
T  31017926 ttcttcaaatgctttggatagttaaacactttggaacacccagaaagatttagatatttaagagaggtgagaacaaatatgctgttgggtatgctt 31018021  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 31478606 - 31478529
Alignment:
Q  127 tttgcaatcttctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttaca 204  Q
    |||||||||||  ||||||||||||||||||||  ||| ||| | || |||||||||||||| |||||| ||| ||||    
T  31478606 tttgcaatctttcaaattcaagtaaacaagcttcgttaaaagactaagagatggatccaactgcacaagttttataca 31478529  T

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Target: scaffold1408 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 1072 - 1209
Alignment:
Q  68 catatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatttttgcaatcttctaaattcaagtaaacaagctttcttaga 166  Q
    ||||||||||| || |||||||| |||| | |||||||||||||||||||||  |||||| | ||||   ||||||||||||||||||||||||||||||    
T  1072 catatttagatatttaagagagctaagaccgaatatgttgttgggtatgcttactagattatagcaacgctctaaattcaagtaaacaagctttcttaga 1171  T
Q  167 agtccaatagatggatccaactccacaagatttttaca 204  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  1172 agtccaatagatggatccaactccacaagttttataca 1209  T

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Target: scaffold0428 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 6818 - 6955
Alignment:
Q  68 catatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttg-tagatttttgcaatcttctaaattcaagtaaacaagctttcttaga 166  Q
    ||||||||||| || |||||||| |||| | |||||||||||||||||||||  |||||| | ||||   ||||||||||||||||||||||||||||||    
T  6818 catatttagatatttaagagagctaagaccgaatatgttgttgggtatgcttactagattatagcaacgctctaaattcaagtaaacaagctttcttaga 6917  T
Q  167 agtccaatagatggatccaactccacaagatttttaca 204  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  6918 agtccaatagatggatccaactccacaagttttataca 6955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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