View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_high_1 (Length: 364)
Name: NF8479_high_1
Description: NF8479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 30995561 - 30995223
Alignment:
| Q |
18 |
acctatactatcatttgcagcaacagatccaacactaacttcactagagttcccatattttgttaggacaacacagagtgatctgaatcaaatggctgct |
117 |
Q |
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| T |
30995561 |
acctatactatcatttgcagcaacagatccaacactaacttcactagagttcccatattttgttaggacaacacagagtgatctgaatcaaatggctgct |
30995462 |
T |
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| Q |
118 |
gtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaagaaatgggatagctgcattaggtgataagc |
217 |
Q |
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| T |
30995461 |
gtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaagaaatgggatagctgcattaggtgataagc |
30995362 |
T |
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| Q |
218 |
tagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaataaacaatgctttatttaaagtagctttgat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
30995361 |
tagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaataaacaatgcattatttaaggtagctttgat |
30995262 |
T |
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| Q |
318 |
ggagtctagagtaattgtccttcatgtaacccttcattt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30995261 |
ggagtctagagtaattgtccttcatgtaacccttcattt |
30995223 |
T |
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