View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_low_2 (Length: 323)
Name: NF8479_low_2
Description: NF8479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 296
Target Start/End: Complemental strand, 39955042 - 39954754
Alignment:
| Q |
6 |
tgagaagaaatatgaacaaaaaactaaggtaaatgctctagaatgatggtaatttaagtttttcatggaattgtattttgaatgattaggctaataacat |
105 |
Q |
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| T |
39955042 |
tgagaagaaatatgaacaaaaaactaaggtaaatgctctagaatgatggtaatttaagtttttcatgg--ttgtattttgaatgattaggctaataacaa |
39954945 |
T |
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| Q |
106 |
atttctgcagtttgtttggtggttgatactaaacaagataatctcttaagttcgagggttttttgcaaagattcatagcttgtgaatcagtaagtttgca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954944 |
atttctgcagtttgtttggtggttgatactaaacaagatactctcttaagttcaagggttttttgcaaagattcatagcttgtgaatcagtaagtttgca |
39954845 |
T |
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| Q |
206 |
tcctcaatcactaatcatccaatttgtttggaaatagtaggaaagagggaaactcaaagttctacaaaagtgaaaaataggtttgagaatc |
296 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954844 |
tcctcaatcactaatcctccaatttgtttggaaatagtaggaaagagggaaactcaaagttctacaaaagtgaaaaataggtttgagaatc |
39954754 |
T |
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