View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_low_3 (Length: 252)
Name: NF8479_low_3
Description: NF8479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 24854541 - 24854775
Alignment:
| Q |
13 |
cagagagcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagat |
112 |
Q |
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| T |
24854541 |
cagagagcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagat |
24854640 |
T |
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| Q |
113 |
tctttgaatg-ataatgcctcggagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctatt |
211 |
Q |
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| T |
24854641 |
tctttgaatgaaaaatgcctcggactaattgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaaccccaaatgctatt |
24854740 |
T |
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| Q |
212 |
gtgcggaaaaactctatcacctcttagttgctcat |
246 |
Q |
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| T |
24854741 |
gtgcggaaaaactccatcacctcttggttgctcat |
24854775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 24537846 - 24537613
Alignment:
| Q |
14 |
agagagcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagatt |
113 |
Q |
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| T |
24537846 |
agagagaaccgttgcaacgaagttgtaattgcggttcataaatctaaacagccacccatgatgacggtatgtgaatgaactcgacactattttccagatt |
24537747 |
T |
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| Q |
114 |
ctttgaatgataa-tgcctcggagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattg |
212 |
Q |
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| T |
24537746 |
cgtttaaggaaaaatgtgtcaaagtaattgttgatgtcatcaaccatttgaatataaccactggaatcaactacttcatggtcaactccaaatgctattg |
24537647 |
T |
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| Q |
213 |
tgcggaaaaactctatcacctcttagttgctcat |
246 |
Q |
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| T |
24537646 |
cgcggaaaaactccatcagctcttggttgctcat |
24537613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 24726773 - 24726885
Alignment:
| Q |
134 |
gagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactctatcacct |
233 |
Q |
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| T |
24726773 |
gagtaattgtttatgtcatcaaccatttgaatataactactagaatcaactaccttatggtcagctccaagtgctattttgcggaaaaactccatcacct |
24726872 |
T |
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| Q |
234 |
cttagttgctcat |
246 |
Q |
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||| ||||||||| |
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| T |
24726873 |
cttggttgctcat |
24726885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 24826633 - 24826745
Alignment:
| Q |
134 |
gagtatttgttcatgtcgtgaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactctatcacct |
233 |
Q |
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| T |
24826633 |
gagtaattgttgatgtcatcaaccatttgaatataagtactggaatcaactaccttatggtcaattccaagtgctattttgcggaaaaactccatcagct |
24826732 |
T |
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| Q |
234 |
cttagttgctcat |
246 |
Q |
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||| ||||||||| |
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| T |
24826733 |
cttggttgctcat |
24826745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 24797430 - 24797516
Alignment:
| Q |
27 |
gcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagatt |
113 |
Q |
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| T |
24797430 |
gcaacgaagttgtaattggggttcaaaaatcttaacagccaccaatgatgccggtatgtgaatgaactcgacactattttccagatt |
24797516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 24696968 - 24697040
Alignment:
| Q |
153 |
gaaccatttgaatataactattggaatcaactactttatggtcaactccaaatgctattgtgcggaaaaactc |
225 |
Q |
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| T |
24696968 |
gaaccatttcagtataaatactgtaagcaactactttatggtcaactcccaatgctactttgcggaaatactc |
24697040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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