View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_low_4 (Length: 250)
Name: NF8479_low_4
Description: NF8479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14637757 - 14637997
Alignment:
| Q |
1 |
caaaatctgttaatggctgcagaatctacctgccaaagaaattaaaatcaaagcatcttagtactcnnnnnnnnnnnnnnnnnntcaatgtgacacctag |
100 |
Q |
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| T |
14637757 |
caaaatctgttagtggttgcagaatctacctgccaaagaaattaaaatcaaagcatcttagtactccaaaaataaaataaaaaatcaatgcgacacctag |
14637856 |
T |
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| Q |
101 |
gtgattgtataagtaatgcataatatcgagagactttaatgtgattgtattagtatctattgttatggattaggtatttataattcagacgagatgattc |
200 |
Q |
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| T |
14637857 |
gtgattgtataagtaatgcataatatcaagagactttaatgtgattgtattagtatctattgttatggattaggtatttttaattgagacgagatgatta |
14637956 |
T |
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| Q |
201 |
gattttacaacatttaactagcagcaatgacatgcaacacc |
241 |
Q |
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| T |
14637957 |
gattttacaacatttaattagcagcaatgacatgcaccacc |
14637997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 14631207 - 14631338
Alignment:
| Q |
85 |
tcaatgtgacacctaggtgattgtataagtaatgcataatatcga--gagactttaatgtgattgtattagtatctattgttatggattaggtatttata |
182 |
Q |
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| T |
14631207 |
tcaatgtgacacctaggtgattgtataagtaatgcataatatcaaaggagactttcatgtgattgtattagtatctattgttatggattaggtattttta |
14631306 |
T |
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| Q |
183 |
attcagacgagatgattcgattttacaacatt |
214 |
Q |
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| T |
14631307 |
attgagacgagatgattagattttacaacatt |
14631338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12889870 - 12890099
Alignment:
| Q |
1 |
caaaatctgttaatggctgcagaatctacctgccaaagaaattaaaatcaaagcatcttagtactcnnnnnnnnnnnnnnnnnn--tcaatgtgacacct |
98 |
Q |
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| T |
12889870 |
caaaatctgtcaatggttgcagaatctacctgccaaagaaatagaaatcaaagcatcttagtactccaaaaaaaaaataaaaaaaatcaatgtgacacaa |
12889969 |
T |
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| Q |
99 |
aggtgattgtataagtaatgcataatatcgagagactttaatgtgattgtattagtatctattgttatggattaggtatttataattcagacgagatgat |
198 |
Q |
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| T |
12889970 |
tcgtgattgtataagtaaggcataatatcaagagagtttaatgagattgtatcagtatctattgatatggattaggtattttcaattgaaacgaggtgat |
12890069 |
T |
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| Q |
199 |
tcga--ttttacaacatttaactagcagca |
226 |
Q |
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| T |
12890070 |
tagatttttttcaacatttaattagcagca |
12890099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 12072005 - 12072091
Alignment:
| Q |
88 |
atgtgacacctaggtgattgtataagtaatgcataatatcgagagactttaatgtgattgtattagtatctattgttatggattaggtat |
177 |
Q |
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| T |
12072005 |
atgtgacacctaggtgattgtg---gtaagccataatatcaagaaaatttaatgtgattgtattagtatctagtgttatggattaggtat |
12072091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 14650896 - 14650971
Alignment:
| Q |
85 |
tcaatgtgacacctaggtgattgtataagtaatgcataatatcgagagactttaatgtgattgtattagtatctat |
160 |
Q |
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| T |
14650896 |
tcaatgtgacacctaggtgattgtatcattaaggcataatatcaaaagactttaatgtgatagtatcagtatctat |
14650971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 14641358 - 14641452
Alignment:
| Q |
85 |
tcaatgtgacacctaggtgattgtataagtaatgcataatatcgagagactttaatgtgattgtattagtatctattgttatggattaggtattt |
179 |
Q |
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| T |
14641358 |
tcaatgtgacaccaaggtgatttcatcaataaggcataatatcaagagactttactgtgattgtatcggtatctagtgttatgcattaggtattt |
14641452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 12071947 - 12071985
Alignment:
| Q |
28 |
acctgccaaagaaattaaaatcaaagcatcttagtactc |
66 |
Q |
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| T |
12071947 |
acctgccaaagaaattaaaatcaaagaatcttagtactc |
12071985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14641276 - 14641340
Alignment:
| Q |
1 |
caaaatctgttaatggctgcagaa--tctacctgccaaagaaattaaaatcaaagcatcttagta |
63 |
Q |
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| T |
14641276 |
caaaatctgtcaatggttgcagaagatctactggccaaagaaataaaaatcaaagcatcttagta |
14641340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 12079816 - 12079901
Alignment:
| Q |
148 |
tattagtatctattgttatggattaggtatttataattcagacgagatgattcgattttacaacatttaactagcagcaatgacatg |
234 |
Q |
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| T |
12079816 |
tattagtatctagtgttatggattacatattttcaattgaaacgaggtgatcagatttt-caacatttaattagcagccatgacatg |
12079901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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