View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8480_low_5 (Length: 228)

Name: NF8480_low_5
Description: NF8480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8480_low_5
NF8480_low_5
[»] chr5 (13 HSPs)
chr5 (1-226)||(30520386-30520611)
chr5 (1-226)||(30560726-30560951)
chr5 (56-228)||(30207640-30207812)
chr5 (16-226)||(29854431-29854641)
chr5 (23-226)||(29873294-29873497)
chr5 (50-226)||(30476495-30476671)
chr5 (16-226)||(30061492-30061702)
chr5 (15-106)||(30712203-30712294)
chr5 (16-226)||(30750766-30750976)
chr5 (152-228)||(30241293-30241369)
chr5 (16-106)||(30484641-30484731)
chr5 (16-106)||(30676064-30676154)
chr5 (16-113)||(30401310-30401407)
[»] chr3 (1 HSPs)
chr3 (16-224)||(25292723-25292931)
[»] chr1 (2 HSPs)
chr1 (16-226)||(7100541-7100751)
chr1 (44-226)||(7580523-7580705)
[»] chr4 (2 HSPs)
chr4 (50-106)||(20295392-20295448)
chr4 (56-113)||(52353194-52353251)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30520386 - 30520611
Alignment:
Q  1 atcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30520386 atcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaac 30520485  T
Q  101 aagtttcttctacaagaatgtgttactgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatg 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30520486 aagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatg 30520585  T
Q  201 gtcgacaagatgataaagagaagatt 226  Q
    ||||| ||||||||||||||||||||    
T  30520586 gtcgagaagatgataaagagaagatt 30520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30560726 - 30560951
Alignment:
Q  1 atcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30560726 atcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaac 30560825  T
Q  101 aagtttcttctacaagaatgtgttactgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatg 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30560826 aagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatg 30560925  T
Q  201 gtcgacaagatgataaagagaagatt 226  Q
    ||||| ||||||||||||||||||||    
T  30560926 gtcgagaagatgataaagagaagatt 30560951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 30207812 - 30207640
Alignment:
Q  56 aaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttactgttagggaaaggtcaatcaatgtggctg 155  Q
    ||||| |||||||  || || ||||||||||||||||||||||||||||||| | ||  |||   ||  ||| |||||||||| |||||  | || || |    
T  30207812 aaagagattacaaggaggttagatgatattgctgaaagtaaaaacaagtttcatttaggagagaatggaacttttagggaaagatcaattgaagtagcag 30207713  T
Q  156 aatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgataaagagaagattat 228  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||    
T  30207712 aatggcgtcaaactagctctattattgctgaaccaaaagtatttgggcgagaagatgataaagagaagattat 30207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 29854641 - 29854431
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaa 115  Q
    |||||| ||||||||||||||| | || ||||  ||||| ||||| |||||||  | ||| |||||||||||||| ||||| ||||||||| ||||||      
T  29854641 aaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctacgg 29854542  T
Q  116 gaatgtgttactgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgata 215  Q
    ||  ||  || ||||| |||||| ||||   | || ||||||||||||||||| ||||| |||||||||||||| ||||| | ||| ||| |||||||||    
T  29854541 gagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaaccaaaagtgtttggacgagaagatgata 29854442  T
Q  216 aagagaagatt 226  Q
    |||| ||||||    
T  29854441 aagaaaagatt 29854431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 29873497 - 29873294
Alignment:
Q  23 atcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaagaatgtg 122  Q
    ||||||||||||| | | || ||||  ||||| ||||| |||||||  ||||| |||||||||||||| ||||| ||||||||| ||||||  ||  ||     
T  29873497 atcatgtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctacgggagggta 29873398  T
Q  123 ttactgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgataaagagaa 222  Q
     || ||||| |||||| ||||   | || ||||||||||||||||| ||||| ||||||| |||||| ||||||| ||| ||| ||||||||||||| ||    
T  29873397 ctattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaaccaaaagtatttggacgagaagatgataaagaaaa 29873298  T
Q  223 gatt 226  Q
    ||||    
T  29873297 gatt 29873294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 30476671 - 30476495
Alignment:
Q  50 aggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttactgttagggaaaggtcaatcaatg 149  Q
    ||||| |||||||||||||  ||||||||| | ||||||||||||||| ||||||||||| ||| |||  ||||   ||||||||||||| |||   | |    
T  30476671 aggttgaaagaaattacaaggagattcgatcaaattgctgaaagtaaagacaagtttcttttacgagagggtgtcgttgttagggaaaggccaaatgaag 30476572  T
Q  150 tggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgataaagagaagatt 226  Q
    | ||||||||||| ||||| ||||| |||||||||||||| ||||| | ||| |||  |||||||| ||||| ||||    
T  30476571 ttgctgaatggcgccaaacaagctccattattgctgaacccaaagtgtttggacgagtagatgatagagagaggatt 30476495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 30061702 - 30061492
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaa 115  Q
    |||||| ||||||||||||||| | ||||| |  ||||| ||||| |||||||  || || |||||||||||||||||||| |||||||||  ||||||     
T  30061702 aaagaacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacag 30061603  T
Q  116 gaatgtgttactgttagggaaaggtca-atcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgat 214  Q
        |||  ||| |||||||||   || ||||| || |||||| |||| |||||  |||| |||||||||||||| ||||| | ||| ||| ||| ||||    
T  30061602 atgggtggcactcttagggaaatcccagatcaa-gtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgat 30061504  T
Q  215 aaagagaagatt 226  Q
    ||||| ||||||    
T  30061503 aaagaaaagatt 30061492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 30712203 - 30712294
Alignment:
Q  15 taaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt 106  Q
    ||||||| ||||||||||||||| | ||||| |  ||||| ||||| |||||||  || || |||||||||||||||||||| |||||||||    
T  30712203 taaagaacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 30712294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 30750976 - 30750766
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaa 115  Q
    |||||| ||||||||||||||| | ||||| |  ||||| ||||| |||||||  || || |||||||||||||||||||| |||||||||  ||||||     
T  30750976 aaagaacatcatgtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacag 30750877  T
Q  116 gaatgtgttactgttagggaaaggtca-atcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgat 214  Q
        |||  ||| |||||||||   || ||||| || |||||| |||| |||||  |||| |||||||||||||| ||||| | ||| ||| ||| ||||    
T  30750876 atgggtggaactcttagggaaatcccagatcaa-gtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgat 30750778  T
Q  215 aaagagaagatt 226  Q
    ||||| ||||||    
T  30750777 aaagaaaagatt 30750766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 30241293 - 30241369
Alignment:
Q  152 gctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgataaagagaagattat 228  Q
    ||||||||||||||||| ||| |||||||| ||||||| ||||| | ||| ||| |||| |||||| ||||||||||    
T  30241293 gctgaatggcgtcaaaccagcgctattattactgaaccaaaagtgtttggacgagaagacgataaaaagaagattat 30241369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 30484731 - 30484641
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt 106  Q
    |||||| ||||||||||||||| | ||||| |  ||||| ||||| |||||||  || || ||||||||||||||||| || |||||||||    
T  30484731 aaagaacatcatgtttcgccatgagattggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagaaagaacaagttt 30484641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 30676064 - 30676154
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt 106  Q
    |||||| ||||||||||||  | | || ||||  ||||| ||||| |||||||  || || |||||||||||||||||||| |||||||||    
T  30676064 aaagaacatcatgtttcgcagtgagatcggcaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 30676154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 30401407 - 30401310
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctac 113  Q
    |||||| ||| ||||||||| | | || ||||  ||||| ||||| |||||||  ||||| |||||||||||||| | ||| ||||| ||||||||||    
T  30401407 aaagaacatcgtgtttcgccgtcagatcggcaacaggttgaaagagattacaagaagattggatgatattgctgatattaagaacaaatttcttctac 30401310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 25292723 - 25292931
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaa 115  Q
    |||||| |||||||||| |||| | |||||||  | ||| ||||| |||||||  ||||| ||||||||||||| || ||| |||||||||||||| | |    
T  25292723 aaagaacatcatgtttcaccattacattggcaacaagttgaaagagattacaaggagattggatgatattgctgcaactaagaacaagtttcttcttcga 25292822  T
Q  116 gaatgtgttactgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgata 215  Q
     |  |||  |||||||||||||| ||||   | || ||||||| ||| |||||||| ||||||||||| ||||| ||||||| ||| ||| |||||||||    
T  25292823 cagggtggaactgttagggaaagctcaactgaagtagctgaatagcgccaaactagttctattattgccgaaccaaaagtatttggacgagaagatgata 25292922  T
Q  216 aagagaaga 224  Q
    |||||||||    
T  25292923 aagagaaga 25292931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 7100751 - 7100541
Alignment:
Q  16 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaa 115  Q
    ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||  | ||||||| ||| |||| || || ||| | |||| |    
T  7100751 aaagaatgtcatgtttcgccattacataggcagtaggttgaatgaaattactagcagactcagtcatattgccgaaggtaagaagaattttatgctacga 7100652  T
Q  116 gaatgtgttactgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgata 215  Q
    ||| |||||||||||| | ||    |||   | |||||||||||||| ||||| |||||  ||||||||||||| ||  | | ||| ||| |||||||||    
T  7100651 gaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaagatgtttggacgagaagatgata 7100552  T
Q  216 aagagaagatt 226  Q
    |||||||||||    
T  7100551 aagagaagatt 7100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 7580523 - 7580705
Alignment:
Q  44 ggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttactgttagggaaaggtcaa 143  Q
    ||||||||||| ||||| ||| ||| |||| || |  | |||||||||| ||| |||||||||||| ||| |||| || ||  |||||  ||||   |||    
T  7580523 ggcactaggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttttacgagaaggtattgttgttacagaaaaaccaa 7580622  T
Q  144 tcaatgtggctgaatggcgtcaaactagctctattattgctgaacctaaagtatatggtcgacaagatgataaagagaagatt 226  Q
    |  | |||||||| ||||| ||||| ||||| |||||||| ||||| || || | ||| ||| ||||||||||||||| ||||    
T  7580623 ttgaagtggctgactggcgccaaaccagctccattattgccgaaccaaaggtgtttggacgagaagatgataaagagaggatt 7580705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 20295392 - 20295448
Alignment:
Q  50 aggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt 106  Q
    ||||||||||| |||||||  || || |||||||||||||||||||| |||||||||    
T  20295392 aggtttaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 20295448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 52353251 - 52353194
Alignment:
Q  56 aaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagtttcttctac 113  Q
    |||||||||||||  ||||||||| |  |||||||||| || ||||||||||||||||    
T  52353251 aaagaaattacaaggagattcgatcaagttgctgaaaggaagaacaagtttcttctac 52353194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University