View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8480_low_6 (Length: 227)
Name: NF8480_low_6
Description: NF8480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8480_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36061924 - 36062145
Alignment:
| Q |
1 |
cgtgaacatgaccgcaaactcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaacccatgttcttgtatttctgtttct |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36061924 |
cgtgaacatgaccgcaacctcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaacccatgttcttgtatttctgtttct |
36062023 |
T |
|
| Q |
101 |
gttatcaaatatatcagagttgtaacatgataaaaatac----tatatgcatctttaaggttaataaagtgaagaacttaagaatgtttaactaattgtt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36062024 |
gttatcaaatatatcagagttgtaacatgataaaaatactatatatatgcatctttaaggttaataaagtgaagaacttaagaatgtttaactaattgtt |
36062123 |
T |
|
| Q |
197 |
cttacatttactgaagtataat |
218 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
36062124 |
cttacatttactgaagtataat |
36062145 |
T |
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