View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_high_4 (Length: 501)
Name: NF8481_high_4
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 5667990 - 5667660
Alignment:
| Q |
13 |
cactttagtggaaaaacacttggttgttgcatatttgaaaaatgagagatatcaacgtatcacaagatagaactagttgtttaagtagttttctgcttga |
112 |
Q |
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| T |
5667990 |
cactttagtggaaaaacacttggttgttgcatatttgaaaaatgagagatatcaacatatcacaagatagaactagttgtttaagtagttttctgcttga |
5667891 |
T |
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| Q |
113 |
gctacgaccctcgcggcaactttaggttcctaaacgcgaataattcattttttaaagtaagtaatctagatcgttgaaatggagttagattccctgttgt |
212 |
Q |
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| T |
5667890 |
gctacgaccttcgcgacgactttaggttcctaaacgcgaataattcattttttaaagtaagtaatctagatcgttgaaatggagttagattccctgttgt |
5667791 |
T |
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| Q |
213 |
aactgggtcatgcagttacagctttcaaccgtccgatctagattaataactgagattgtttcacacagtgaaactgcctttgtgatatggactgtctggt |
312 |
Q |
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| T |
5667790 |
aactggatcatgtagttacagctttcaaccgtccgatctagattaataattgagattgtttcacacagtgaaactgcctttgtgatatggactgtctggt |
5667691 |
T |
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| Q |
313 |
ctaaaatcaatggtcatgatttaccgccggt |
343 |
Q |
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| T |
5667690 |
ctaaaatcaatggtcatgatttaccaccggt |
5667660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 339 - 486
Target Start/End: Complemental strand, 5667076 - 5666929
Alignment:
| Q |
339 |
ccggtgtgtaactgcatcaatacgcatagcaggcaatctcgaacccattgaaatcgtctgtatacattaagtttatatgcatcaaacattatgaatgtat |
438 |
Q |
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||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5667076 |
ccggtgtgtaactacgtcaatacgcatagtaggcaatctcgatcccattgaaatcgtctgtatacattaagtttatatgcatcaaacattatgaatgtat |
5666977 |
T |
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| Q |
439 |
catatatcaactgccgattttagctgagatcacttggtatacctttta |
486 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5666976 |
catatgtcaactgccgattttagctgagatcacttggtatacctttta |
5666929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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