View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8481_low_1 (Length: 923)

Name: NF8481_low_1
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8481_low_1
NF8481_low_1
[»] chr1 (7 HSPs)
chr1 (1-915)||(6968141-6969055)
chr1 (1-294)||(1000204-1000502)
chr1 (617-865)||(1000533-1000780)
chr1 (41-392)||(2177955-2178306)
chr1 (28-341)||(51316041-51316361)
chr1 (488-595)||(2177799-2177906)
chr1 (679-781)||(6971087-6971189)
[»] chr4 (1 HSPs)
chr4 (503-797)||(44395984-44396278)
[»] chr6 (7 HSPs)
chr6 (100-152)||(2842791-2842843)
chr6 (340-387)||(2829147-2829194)
chr6 (343-393)||(2833023-2833073)
chr6 (676-753)||(2833326-2833403)
chr6 (100-152)||(2829385-2829437)
chr6 (503-560)||(2860462-2860519)
chr6 (503-560)||(2865841-2865898)
[»] chr7 (1 HSPs)
chr7 (676-746)||(1800792-1800862)


Alignment Details
Target: chr1 (Bit Score: 899; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 1 - 915
Target Start/End: Complemental strand, 6969055 - 6968141
Alignment:
Q  1 gcttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6969055 gcttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcctcagctaccttag 6968956  T
Q  101 gcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968955 gcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataatt 6968856  T
Q  201 cattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968855 cattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccaca 6968756  T
Q  301 tagttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgacttgctttgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968755 tagttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgacttgctttgt 6968656  T
Q  401 tcttttctttatctgctgcttgtaatccctgcagagaagcagcagcaacttgattcacctcctcatttttctcctctttttctttgtcattctcagaatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6968655 tcttttctttatctgctgcttgtaatccctgcagagaagcagcagcaacttgattcacctcctcatttttctcctctttttctttgtcattctccgaatc 6968556  T
Q  501 tgtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagca 600  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968555 tgtcttcctctgaccggtaagatcaagcgaacaatcaatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagca 6968456  T
Q  601 ttatttttcacattggttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccat 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968455 ttatttttcacattggttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccat 6968356  T
Q  701 aaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttcttttt 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968355 aaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttcttttt 6968256  T
Q  801 aggactcattgcaattgtttcaaacgaagacggatgttcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtg 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968255 aggactcattgcaattgtttcaaacgaagacggatgttcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtg 6968156  T
Q  901 taaagctttctctgc 915  Q
    |||||||||||||||    
T  6968155 taaagctttctctgc 6968141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 1000204 - 1000502
Alignment:
Q  1 gcttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaa--cctctccaatgatgcctcaacatcttcatcagctacctt 98  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  1000204 gcttctttcttagctttcatctcagcctcttccttagaggttctaagtgcttggatcaaagcctctccaatgatgcctcaacatcttcat-agctacctt 1000302  T
Q  99 aggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataa 198  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||    
T  1000303 aggcatcaagttttcagcaacatcagcctgagttatgttggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaatactcagataa 1000402  T
Q  199 ttcattgccaacattttgaatccatcaaaaccacagtaagacaactcaat----atgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc 294  Q
     ||||||| | |||||||||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1000403 ctcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc 1000502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 617 - 865
Target Start/End: Original strand, 1000533 - 1000780
Alignment:
Q  617 ttaactcaatgtcataaatatcatacttcaaaaaa-ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctc 715  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| | ||||||||||     
T  1000533 ttaactcaatgtcataaatatcatacttcaaaaaaattagaaatggcagtaactagtgatgattttcctgttcctggaggaccatagaacaaatagccta 1000632  T
Q  716 tcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaat 815  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||    
T  1000633 tcttccaaggcttaccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctatttcttc-ttttaggattcattgcaat 1000731  T
Q  816 tgtttcaaacgaagacggatgttcaaatatcacatgactccacttacctc 865  Q
    ||||||||| ||||| |||||||||||||| ||||||||||| |||||||    
T  1000732 tgtttcaaa-gaagatggatgttcaaatataacatgactccatttacctc 1000780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 41 - 392
Target Start/End: Complemental strand, 2178306 - 2177955
Alignment:
Q  41 ttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagccggagtcatgttagt 140  Q
    ||||||||||||| |||||||||  |||||  | | |||||||||||| | ||||||| |||||||| ||||||||||||||||| || ||||| |||||    
T  2178306 ttctaagtgcttgaatcaacctcaacaatggagtcgcaacatcttcattatctacctttggcatcaaattttcagcaacatcagctggtgtcatattagt 2178207  T
Q  141 ctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagac 240  Q
    |||| ||||||||| |  |||| | |||||||||  ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |    
T  2178206 ctctaccaacaagcatgcaatcttgtcgaacaaaaaatgagattcaagactcagatacttcgttgccaacattttgaatccatcaaaacaacaataaggc 2178107  T
Q  241 aactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacatagttagtagtaaatataatcaatctctcaccagtactag 340  Q
    || || ||| |||||||||||| ||| |||| ||| ||||| ||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||    
T  2178106 aattcgataagcatgtccattcttcctcgacaaattaaagcatgatcaagtttctccgcatagttagtagtgaatataattaacctctcaccagtactag 2178007  T
Q  341 cagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgact 392  Q
    | |||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  2178006 ctgaccaaatcccatcaatgaaattcaacaatcctggaagtgttatctgact 2177955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 28 - 341
Target Start/End: Original strand, 51316041 - 51316361
Alignment:
Q  28 tcttccttggaggttctaagtgctt--ggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagc 125  Q
    |||||||| ||| ||||||| ||||  | ||||||||||||||||| | |||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  51316041 tcttccttagagcttctaagggcttttgtatcaacctctccaatgaggtctcaacatcttcattagataccttaggcatcaagtttttagcaacatcagc 51316140  T
Q  126 cggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatca 225  Q
     || ||||| ||||||||||||||||||| |  ||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51316141 tggtgtcatattagtctcttccaacaagcatctaatcgtctcgagcaaaaaatgagattcaagactcagataattcattgccaacattttgaatccatca 51316240  T
Q  226 aaaccacagtaagacaactcaatatgcatgtcc-----attcgtccacgacgaatcaaagcttgatcaagtttctccacatagttagtagtaaatataat 320  Q
    |||||||| |||||||| ||||||||||| |||     |||| ||  | |||||| | ||| |||| |||||||||||||||||||||||||||||||||    
T  51316241 aaaccacaataagacaattcaatatgcatatccattatattcttcatctacgaattagagcatgattaagtttctccacatagttagtagtaaatataat 51316340  T
Q  321 caatctctcaccagtactagc 341  Q
    ||||||||||  |||||||||    
T  51316341 caatctctcatgagtactagc 51316361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 488 - 595
Target Start/End: Complemental strand, 2177906 - 2177799
Alignment:
Q  488 cattctcagaatctgtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagttt 587  Q
    ||||||||||| |||||||||| | ||| |||||||||||  || |||| ||| |||| ||||||||||| || | |||  |||||||||||||||||||    
T  2177906 cattctcagaacctgtcttcctttaacctgtaagatcaagcaaagaatcaatagcttcaataacaacaaccgattcacttttgattccaatcaaaagttt 2177807  T
Q  588 ccttaact 595  Q
    ||||||||    
T  2177806 ccttaact 2177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 781
Target Start/End: Complemental strand, 6971189 - 6971087
Alignment:
Q  679 tttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcat 778  Q
    ||||| || ||||||||||||||||| ||||| ||||| ||||||| | | |||||| |||||||  | ||   ||| ||||| ||||||| ||||||||    
T  6971189 tttccagtccctggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcat 6971090  T
Q  779 caa 781  Q
    |||    
T  6971089 caa 6971087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 503 - 797
Target Start/End: Complemental strand, 44396278 - 44395984
Alignment:
Q  503 tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcatt 602  Q
    ||||||| ||||| |||||||||||||||||||| || ||||| ||||||| || ||||||||| ||  |  |||||||||| ||||| ||||||| |||    
T  44396278 tcttcctttgacctgtaagatcaagtgaacaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtatt 44396179  T
Q  603 atttttcacattggttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataa 702  Q
    ||  |||||    |||||||| |  ||||||| ||||||   ||| |||||||| ||||||||||  | || |||||| || || |||||||||||| ||    
T  44396178 atccttcactgctgttaactctaaatcataaacatcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaa 44396079  T
Q  703 agcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctt 797  Q
    || ||||| || || |||||||  || |||||  | |||||| | || |||   ||||| || ||||| | ||| |||| |||||||||||||||    
T  44396078 agtaaataaccccttttccaagctttaccaatcctagcataaaaatccttacttttactaaaagtaaccaaatcttcaataatctctttcttctt 44395984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 2842843 - 2842791
Alignment:
Q  100 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa 152  Q
    |||||||| ||||||||||||||||| || ||||| |||||||||||||||||    
T  2842843 ggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaacaa 2842791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 2829194 - 2829147
Alignment:
Q  340 gcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacc 387  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  2829194 gcagaccaaatcccatcaataaaattcaacaaaccagaaagagttacc 2829147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 2833023 - 2833073
Alignment:
Q  343 gaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgactt 393  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||| ||||    
T  2833023 gaccaaattccatcaatgaaattcaacaaaccagaaagagttaccttactt 2833073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 753
Target Start/End: Original strand, 2833326 - 2833403
Alignment:
Q  676 gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactcttta 753  Q
    |||||||| |||||||||||||||||||| | ||| || |  ||||||| ||| |||| ||| |||||||||||||||    
T  2833326 gattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttccaactttagcataatactcttta 2833403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 2829437 - 2829385
Alignment:
Q  100 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa 152  Q
    |||||||| ||||||||||||||||| || ||||| ||||||| |||||||||    
T  2829437 ggcatcaaattttcagcaacatcagcaggtgtcatattagtcttttccaacaa 2829385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 560
Target Start/End: Original strand, 2860462 - 2860519
Alignment:
Q  503 tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga 560  Q
    ||||||||||||||||||| || || |||||||| |||||||| ||||| | ||||||    
T  2860462 tcttcctctgaccggtaagctcgagagaacaatcaatatcttcaataacgataactga 2860519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 560
Target Start/End: Original strand, 2865841 - 2865898
Alignment:
Q  503 tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga 560  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||| ||||| | ||||||    
T  2865841 tcttcctttgaccggtaagctcaagagaacaatcaatatcttcaataacgataactga 2865898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 746
Target Start/End: Complemental strand, 1800862 - 1800792
Alignment:
Q  676 gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataata 746  Q
    ||||| ||||||||||||||||||||||| ||||| || |  ||||||| ||| || ||||||||||||||    
T  1800862 gatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagccttaccgatttttgcataata 1800792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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