View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_low_10 (Length: 380)
Name: NF8481_low_10
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_low_10 |
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| [»] scaffold0153 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 1165474 - 1165819
Alignment:
| Q |
18 |
ccttccaccctcctcaaggaagacgctttctccctcatctccaatctctggattgataatttccgccaacccgataaactcatcaccaacctctcctcca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1165474 |
ccttccaccctcctcaaggaagacgctttctccctcatctccaatctctggattgataacttccgccaacccgataaactcatcaccaacctctcctcca |
1165573 |
T |
|
| Q |
118 |
ccctccgccgcttcgaactctggctcctcgcttaccagaaagtcaccaccgatgaaaccggttcctacactcctcgctcctccatccaacgctctgaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1165574 |
ccctccgccgcttcgaactctggctcctcgcttaccagaaagtcaccaccgatgaaaccggttcctacactcctcgctcctccatccaacgctctgaact |
1165673 |
T |
|
| Q |
218 |
ggaaaacctcctcgctcttcgtaactccgtcattgacggcaatttcaaatggggctcccgtctcaaattcttcatcaaatcacccattgataaaaccgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1165674 |
ggaaaacctcctcgctcttcgtaactccgtcattgacggcaatttcaaatggggctcccgtctcaaattcttcatcaaatcacccattgataaaaccgat |
1165773 |
T |
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| Q |
318 |
cacgattcgttatcgaaaagaaaaatcaaaatcatcttaaacacca |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1165774 |
cacgattcgttatcgaaaagaaaaatcaaaatcatcttaaacacca |
1165819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 27128 - 27473
Alignment:
| Q |
18 |
ccttccaccctcctcaaggaagacgctttctccctcatctccaatctctggattgataatttccgccaacccgataaactcatcaccaacctctcctcca |
117 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
27128 |
ccttccaccctccttaaggaagacgctttctcgctcatctccaatctctggatcgaaaacttccgccaacccgataaactcatcaccaacctctcctcca |
27227 |
T |
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| Q |
118 |
ccctccgccgcttcgaactctggctcctcgcttaccagaaagtcaccaccgatgaaaccggttcctacactcctcgctcctccatccaacgctctgaact |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
27228 |
ccctccgccgcttcgaactctggctcctagcttaccagaaagtcaccaccgatgaaaccggttcctacacccctcggtcctccatccaacgctctgaact |
27327 |
T |
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| Q |
218 |
ggaaaacctcctcgctcttcgtaactccgtcattgacggcaatttcaaatggggctcccgtctcaaattcttcatcaaatcacccattgataaaaccgat |
317 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27328 |
cgaaaacctcctcgctcttcgtaacgccgtcgttgacggcaatttcaaatggggctcccgtctcaaattcttcatcaaatcacccattgataaaaccgat |
27427 |
T |
|
| Q |
318 |
cacgattcgttatcgaaaagaaaaatcaaaatcatcttaaacacca |
363 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
27428 |
cacgattccttatccaaaagaaaaatcaaaatcatcttaaacacca |
27473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 35334 - 35436
Alignment:
| Q |
18 |
ccttccaccctcctcaaggaagacgctttctccctcatctccaatctctggattgataatttccgccaacccgataaactcatcaccaacctctcctcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |
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| T |
35334 |
ccttccaccctcctcaaggaagacgctttctccctcatctccaatctctggattgaaaacttccgccaacccgataaactcatcaccaacctctcctaca |
35433 |
T |
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| Q |
118 |
ccc |
120 |
Q |
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||| |
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|
| T |
35434 |
ccc |
35436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 35427 - 35464
Alignment:
| Q |
180 |
tcctacactcctcgctcctccatccaacgctctgaact |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
35427 |
tcctacacccctcgctcctccatccaacgctctgaact |
35464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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