View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_low_12 (Length: 251)
Name: NF8481_low_12
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2497727 - 2497962
Alignment:
| Q |
1 |
tagttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaaacaacatatgttaaaatgcacaacagaatggcagaaaaatatg |
100 |
Q |
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| T |
2497727 |
tagttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaaacaacatatgttaaaatgcacaacagaatggcagaaaaatatg |
2497826 |
T |
|
| Q |
101 |
tgatagtcatcaataataacatatgttgtacaatatcatttgtgaataaaacaaaaacgaacactaatagtgagctattgttggttcctaacagatagta |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2497827 |
cgatagtcatcaata---acatatgttgtacaatatcatttgtgaataaaacaaaaacgaacactaatagtgagctattgttggttcctaacagatagta |
2497923 |
T |
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| Q |
201 |
tccaaggaaatgagtcatttatcccaagaaaaccttcat |
239 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
2497924 |
tccaaggaaatgagtcatttatcccatgaaaaccttcat |
2497962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 2513070 - 2513123
Alignment:
| Q |
4 |
ttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaa |
57 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||| |||| |||||| |
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| T |
2513070 |
ttcaaagaaaccagaataagcagtcattcctggcatacctgttttcagagaaaa |
2513123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 2506457 - 2506497
Alignment:
| Q |
4 |
ttcaaagaaaccagcataagcagttattcctggcatacctg |
44 |
Q |
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| T |
2506457 |
ttcaaagaaaccagcataagcagtcattcctggcatacctg |
2506497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 2517430 - 2517486
Alignment:
| Q |
4 |
ttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaaaca |
60 |
Q |
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||||||||||||||||||||| || |||||||||||||||||| ||| | ||||||| |
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| T |
2517430 |
ttcaaagaaaccagcataagcggtcattcctggcatacctgtgctcaaacaaaaaca |
2517486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 1459013 - 1458972
Alignment:
| Q |
4 |
ttcaaagaaaccagcataagcagttattcctggcatacctgt |
45 |
Q |
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| T |
1459013 |
ttcaaagaaaccagcataagcagtcattccaggcatacctgt |
1458972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 2428720 - 2428679
Alignment:
| Q |
4 |
ttcaaagaaaccagcataagcagttattcctggcatacctgt |
45 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
2428720 |
ttcaaagaaaccagcataagcagtcattccaggcatacctgt |
2428679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 2435087 - 2435046
Alignment:
| Q |
4 |
ttcaaagaaaccagcataagcagttattcctggcatacctgt |
45 |
Q |
| |
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|||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
2435087 |
ttcaaagaaaccagcatatgcagtcattcccggcatacctgt |
2435046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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