View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8481_low_14 (Length: 246)

Name: NF8481_low_14
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8481_low_14
NF8481_low_14
[»] chr7 (13 HSPs)
chr7 (11-229)||(8802304-8802528)
chr7 (1-215)||(11776177-11776391)
chr7 (148-229)||(8802600-8802681)
chr7 (1-56)||(48071376-48071431)
chr7 (154-229)||(48071486-48071561)
chr7 (13-118)||(21416266-21416371)
chr7 (173-229)||(27391771-27391827)
chr7 (14-112)||(27597919-27598017)
chr7 (13-106)||(2463096-2463190)
chr7 (5-118)||(23578121-23578234)
chr7 (1-46)||(11776460-11776505)
chr7 (2-59)||(27391883-27391939)
chr7 (150-214)||(24903016-24903081)
[»] chr3 (18 HSPs)
chr3 (1-215)||(40195933-40196155)
chr3 (1-230)||(16869625-16869856)
chr3 (1-195)||(17732017-17732216)
chr3 (1-195)||(19033248-19033447)
chr3 (1-118)||(54017661-54017779)
chr3 (1-148)||(43978688-43978837)
chr3 (1-110)||(32200975-32201084)
chr3 (1-118)||(23162113-23162230)
chr3 (142-229)||(17731875-17731962)
chr3 (142-229)||(19033106-19033193)
chr3 (5-118)||(16143366-16143479)
chr3 (1-58)||(43481578-43481633)
chr3 (1-55)||(43978982-43979036)
chr3 (1-56)||(16871072-16871127)
chr3 (150-224)||(53981632-53981707)
chr3 (137-186)||(23162308-23162358)
chr3 (53-118)||(32201251-32201317)
chr3 (1-54)||(23161832-23161884)
[»] chr5 (12 HSPs)
chr5 (3-158)||(41341338-41341498)
chr5 (1-154)||(14168820-14168979)
chr5 (141-229)||(41340379-41340466)
chr5 (158-229)||(5963783-5963854)
chr5 (150-229)||(41341555-41341634)
chr5 (1-56)||(3294929-3294984)
chr5 (1-56)||(5963673-5963728)
chr5 (150-229)||(34103654-34103733)
chr5 (3-54)||(41340271-41340322)
chr5 (5-118)||(36389111-36389221)
chr5 (1-58)||(34103542-34103599)
chr5 (141-192)||(14169052-14169103)
[»] chr8 (8 HSPs)
chr8 (5-224)||(5981559-5981787)
chr8 (5-110)||(2954342-2954447)
chr8 (1-56)||(12156771-12156826)
chr8 (1-41)||(29103327-29103367)
chr8 (1-48)||(14028323-14028370)
chr8 (5-46)||(2954625-2954666)
chr8 (1-49)||(5981846-5981894)
chr8 (8-56)||(11576034-11576082)
[»] chr1 (11 HSPs)
chr1 (2-118)||(31973449-31973565)
chr1 (1-184)||(43834350-43834540)
chr1 (1-224)||(4392023-4392245)
chr1 (1-118)||(34665922-34666039)
chr1 (1-56)||(15327846-15327901)
chr1 (1-56)||(4392305-4392360)
chr1 (148-229)||(25293562-25293643)
chr1 (1-57)||(25294900-25294956)
chr1 (177-229)||(27686529-27686582)
chr1 (1-41)||(27686637-27686677)
chr1 (17-54)||(25294960-25294997)
[»] chr4 (15 HSPs)
chr4 (26-224)||(47680726-47680933)
chr4 (1-132)||(10396330-10396461)
chr4 (1-145)||(47681051-47681204)
chr4 (1-224)||(51681355-51681583)
chr4 (1-58)||(1868039-1868096)
chr4 (1-118)||(11197154-11197271)
chr4 (59-223)||(26473480-26473655)
chr4 (5-109)||(51681187-51681290)
chr4 (1-48)||(10396129-10396176)
chr4 (26-99)||(47680316-47680390)
chr4 (18-158)||(8445743-8445883)
chr4 (1-105)||(11307692-11307796)
chr4 (5-112)||(34946228-34946335)
chr4 (1-91)||(47680575-47680666)
chr4 (176-229)||(1868151-1868204)
[»] chr6 (10 HSPs)
chr6 (75-229)||(22605164-22605313)
chr6 (136-222)||(9362819-9362905)
chr6 (117-215)||(21118867-21118966)
chr6 (150-229)||(22604999-22605078)
chr6 (1-56)||(21130170-21130225)
chr6 (1-118)||(7301413-7301530)
chr6 (1-54)||(22605368-22605421)
chr6 (112-224)||(22612177-22612291)
chr6 (6-48)||(21297251-21297293)
chr6 (1-42)||(22605133-22605174)
[»] scaffold0014 (1 HSPs)
scaffold0014 (178-229)||(197827-197878)
[»] chr2 (5 HSPs)
chr2 (1-224)||(40053267-40053499)
chr2 (1-48)||(13792607-13792654)
chr2 (60-112)||(44981933-44981987)
chr2 (166-222)||(11727640-11727697)
chr2 (1-105)||(19548086-19548189)
[»] scaffold0548 (1 HSPs)
scaffold0548 (1-105)||(4182-4286)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 8802528 - 8802304
Alignment:
Q  11 tcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggat 109  Q
    ||||| |||||||| |||||||||||||||| | ||||||||||||| ||  ||||||||| ||| |||  |||||||||||| ||||||| ||||||||    
T  8802528 tcctaatcgatgtgggacataatcactcacactagattacccaacaatctttccctcaagtgtgaatcagccacatcactagcctgatccatactaggat 8802429  T
Q  110 cccgctccc-----ccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagacca 204  Q
    |||||||||     ||||| |||||||||| ||||||||||||||||||||| ||||||| |||  ||  |||||||||||||||||| |||||||||||    
T  8802428 cccgctcccgctccccactgagcctaaccatggctctgataccactgttggggagtccggagagtcccaagagcggcaatgggccaaacgtccaagacca 8802329  T
Q  205 taagagacttaaacaccacactctt 229  Q
    ||||||||||||||||||| |||||    
T  8802328 taagagacttaaacaccacgctctt 8802304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 11776177 - 11776391
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||| | |||||||| ||||||||||||||||| |||| |||||||||||| ||||||    
T  11776177 tttcctccattcctagttgatgtgggacataatcattcacacttgaat-cccaacaatctccccctcaagtatgagtcacccacatcactagcctgatcc 11776275  T
Q  100 acactaggatcccgctcccccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtcca 198  Q
    || ||||||||||||| ||||||  |||||||||| || ||||||||||  ||||||| ||||| |||||||||| |||   ||||| ||||||| |||     
T  11776276 acgctaggatcccgct-ccccaccgagcctaaccagggttctgataccagttgttggggagtccagggagcgccgagagtaacaatgagccaaat-tcct 11776373  T
Q  199 agacc-ataagagactta 215  Q
    ||||| ||||||||||||    
T  11776374 agaccaataagagactta 11776391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 8802681 - 8802600
Alignment:
Q  148 actgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||||| |||||| || || ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  8802681 actgttggggagtccgcggtgccccgcgagcggcaatgggtcaaatgtccatgaccataagagacttaaacaccacactctt 8802600  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48071431 - 48071376
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  48071431 tttcctccattcctagtcgatgtgggacataatcactgacacttgattacccaaca 48071376  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 48071561 - 48071486
Alignment:
Q  154 gggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    |||| |||||| |||  |||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  48071561 gggaggtccggcgagtcccggaagcggcaatgggccaaacgtccaagatcataagagacttaaacatcacactctt 48071486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 21416266 - 21416371
Alignment:
Q  13 ctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcc 111  Q
    ||||| |||||| |||||||||||||||| |||||| || || ||  ||||||| |||| ||| |||| |||||||||||  ||||||||||||||||||    
T  21416266 ctagttgatgtgggacataatcactcacacttgatt-cctaaaaatttccccctgaagtgtgactcacccacatcactaggatgatccacactaggatcc 21416364  T
Q  112 cgctccc 118  Q
    |||||||    
T  21416365 cgctccc 21416371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 27391771 - 27391827
Alignment:
Q  173 gggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||    
T  27391771 gggagcggcaatgagccaaacgttcaagactataagagacttaaacaccacactctt 27391827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 27598017 - 27597919
Alignment:
Q  14 tagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatccc 112  Q
    ||||||||||||||||| |||||||||| ||||||  ||||| | ||| || |||||| ||| |||| |||||||||||  |||||||||||||| ||||    
T  27598017 tagtcgatgtgagacattatcactcacacttgatt-tccaacgatctctccttcaagtgtgactcacccacatcactaggatgatccacactagggtccc 27597919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 2463190 - 2463096
Alignment:
Q  13 ctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactag 106  Q
    ||||||||||||||||||||||||||||| || |||  ||||||| || | ||| |||| ||| |||| |||||||||| | |||||||| ||||    
T  2463190 ctagtcgatgtgagacataatcactcacacttaattttccaacaatcttctcctaaagtgtgagtcacccacatcactaacctgatccacgctag 2463096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 23578121 - 23578234
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacac 103  Q
    ||||||| ||| |||||||| ||| ||||||||||||  |||  ||||||||| |||| |||||||| ||| | || || ||||||||| |||| ||| |    
T  23578121 ctccatttctactcgatgtgggacttaatcactcacacatgaa-acccaacaatctccgcctcaagtttgagtgacccatatcactagcctgattcacgc 23578219  T
Q  104 taggatcccgctccc 118  Q
    |||||||||||||||    
T  23578220 taggatcccgctccc 23578234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11776460 - 11776505
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttga 46  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  11776460 tttcctccattcctagttgatgtgggacataatcactcacacttga 11776505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 27391883 - 27391939
Alignment:
Q  2 ttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaac 59  Q
    |||||||||||||| | |||||| |||||||||||||||| ||||||| |||||||||    
T  27391883 ttcctccattcctatt-gatgtgggacataatcactcacacttgattatccaacaaac 27391939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 24903081 - 24903016
Alignment:
Q  150 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagacca-taagagactt 214  Q
    |||||| || || ||||||| ||||||||||||||| || ||| ||||||||||| ||||||||||    
T  24903081 tgttggaaaatctggggagctccgggagcggcaatgcgctaaacgtccaagaccactaagagactt 24903016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 40195933 - 40196155
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||| ||| |||| |||||||||||| ||||||    
T  40195933 tttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatcc 40196032  T
Q  100 acactaggatcccgctc------ccccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaa 192  Q
    |||||||||||||||||      |||||| |||||||||||  ||||||||||||  ||||||| || ||||||||| ||  ||||||||||||||||||    
T  40196033 acactaggatcccgctcccgctaccccaccaagcctaaccagagctctgataccagttgttggggagaccggggagccccaagagcggcaatgggccaaa 40196132  T
Q  193 tgtccaagaccataagagactta 215  Q
      || ||||||||||||||||||    
T  40196133 catctaagaccataagagactta 40196155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16869625 - 16869856
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattaccc-aacaaactccccctcaagtatga-tcactcacatcactagcttgatc 98  Q
    ||||||| ||||||| ||||  || |||||||||||||||| |||||||||| ||||  |||| |||||||| ||| |||| |||||||||||| |||||    
T  16869625 tttcctctattcctaatcgacatgggacataatcactcacacttgattaccctaacattctcctcctcaagtgtgaatcacccacatcactagcatgatc 16869724  T
Q  99 cacactaggatcccgctcccccactaagcctaaccacggctctgataccactgttggga-agtccggggagcgccgggagcggcaatgggccaaatgtcc 197  Q
    ||||||||||||  ||||||| ||  |||||||||||| || |||||||||| || ||| |||||||||||||| ||||||||||||| || |||| |||    
T  16869725 cacactaggatcttgctcccc-accgagcctaaccacgactttgataccactttttggagagtccggggagcgctgggagcggcaatgtgctaaatatcc 16869823  T
Q  198 aagaccataagagacttaaacaccacactcttg 230  Q
    | |||| ||||||||||||||||||||||||||    
T  16869824 acgaccttaagagacttaaacaccacactcttg 16869856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 17732017 - 17732216
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatcc 99  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||||| || ||||  |||||||||||| ||||||    
T  17732017 tttcctccattcctagtcgatgtgggacataatcactcacacttgattatccaacaacctcccactcaagtgtgaatcatccacatcactagcctgatcc 17732116  T
Q  100 acactaggatcccgctc-----ccccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatg 194  Q
    | |||||||||||||||     ||||||| |||||||||||||||||||||||||||||||| |||  ||||||| |  |||| ||||||||||||||||    
T  17732117 a-actaggatcccgctcccgctccccactgagcctaaccacggctctgataccactgttggggagtttggggagccctaggagtggcaatgggccaaatg 17732215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 19033248 - 19033447
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatcc 99  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||||| || ||||  |||||||||||| ||||||    
T  19033248 tttcctccattcctagtcgatgtgggacataatcactcacacttgattatccaacaacctcccactcaagtgtgaatcatccacatcactagcctgatcc 19033347  T
Q  100 acactaggatcccgctc-----ccccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatg 194  Q
    | |||||||||||||||     ||||||| |||||||||||||||||||||||||||||||| |||  ||||||| |  |||| ||||||||||||||||    
T  19033348 a-actaggatcccgctcccgctccccactgagcctaaccacggctctgataccactgttggggagtttggggagccctaggagtggcaatgggccaaatg 19033446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 54017661 - 54017779
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatcc 99  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||| ||||||    
T  54017661 tttcttccattcctagtcgatgtgagacataatcactcacacttgattacccaacaatctccccctcaagtgtgaatcacccacatcactagcctgatcc 54017760  T
Q  100 acactaggatcccgctccc 118  Q
    |||||||| ||||||||||    
T  54017761 acactagggtcccgctccc 54017779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 43978688 - 43978837
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatcc 99  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||| ||||||||||||| || ||||| ||||||||||| |||||||    
T  43978688 tttcctccattcctagtcgatgtgggacataatcactcacacttgattttccaacaatctccccctcaagtgtgaatcac-cacatcactagtttgatcc 43978786  T
Q  100 acactagg--atcccgctcccccactaagcctaaccacggctctgatacca 148  Q
    ||||||||  |||||||||||| ||  |||||||||| |||| | ||||||    
T  43978787 acactaggatatcccgctccccaaccgagcctaaccatggctataatacca 43978837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 32201084 - 32200975
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||  ||| |||| |||||||||||| |||||     
T  32201084 tttccttcatttttagtcgatgtgagacataatcactcacatttgatt-cccaacaatctcccccttaagcgtgactcacccacatcactagcatgatct 32200986  T
Q  100 acactaggatc 110  Q
    ||| |||||||    
T  32200985 acattaggatc 32200975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 23162230 - 23162113
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||||||||||| |||||||| |||||||||||||||| || ||| | || ||| | ||||||||||| ||| |||| ||||| |||||| ||||||    
T  23162230 tttcctccattcctaatcgatgtgggacataatcactcacactttatttctcaccaatc-ccccctcaagtgtgagtcacccacattactagcctgatcc 23162132  T
Q  100 acactaggatcccgctccc 118  Q
    ||||||| ||| |||||||    
T  23162131 acactagaatctcgctccc 23162113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 17731875 - 17731962
Alignment:
Q  142 gataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||||||||| |||||  ||||||| | ||||||||||||||| |||| ||  ||||||||||| ||||| ||||||||||||||    
T  17731875 gataccactgttgtgaagtttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactctt 17731962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 19033106 - 19033193
Alignment:
Q  142 gataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||||||||| |||||  ||||||| | ||||||||||||||| |||| ||  ||||||||||| ||||| ||||||||||||||    
T  19033106 gataccactgttgtgaagtttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactctt 19033193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 16143479 - 16143366
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacac 103  Q
    ||||||| ||||  ||||||  |||| |||||||||| |||||| || ||||| ||||||||||||| ||| |||| |||||||||||  ||||||||||    
T  16143479 ctccatttctagcagatgtggaacattatcactcacacttgatttcc-aacaatctccccctcaagtgtgactcacccacatcactaggatgatccacac 16143381  T
Q  104 taggatcccgctccc 118  Q
    ||| |||||||||||    
T  16143380 tagaatcccgctccc 16143366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43481633 - 43481578
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  43481633 tttcctccattcctagtcgatgtgagacataatcactcacacttga--acccaacaaa 43481578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43978982 - 43979036
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaac 55  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  43978982 tttcctccattcttagtcgatgtgggacataatcactcacatttgatttcccaac 43979036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16871072 - 16871127
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    ||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||    
T  16871072 tttcctccattccaaatcgatgtgggacataatcactcacacttgattacccaaca 16871127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 53981707 - 53981632
Alignment:
Q  150 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagacca-taagagacttaaacaccaca 224  Q
    ||||||| |||||||||| |||||||| |||||||  || ||| ||||||||||| ||| ||||||| ||||||||    
T  53981707 tgttggggagtccggggaacgccgggaacggcaattagctaaacgtccaagaccactaaaagacttagacaccaca 53981632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 23162308 - 23162358
Alignment:
Q  137 gctctgataccact-gttgggaagtccggggagcgccgggagcggcaatgg 186  Q
    |||||||||||| | |||||| |||||||||||| ||||||||||||||||    
T  23162308 gctctgataccagttgttggggagtccggggagctccgggagcggcaatgg 23162358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 32201317 - 32201251
Alignment:
Q  53 aacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc 118  Q
    ||||| ||||||||||||| ||| |||| ||||||||||| | || | |||||||||||||||||||    
T  32201317 aacaatctccccctcaagtgtgactcacccacatcactagttggacctacactaggatcccgctccc 32201251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23161884 - 23161832
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaa 54  Q
    ||||||| |||| ||||||||||| |||||||||||||||| |||||| |||||    
T  23161884 tttcctctattcttagtcgatgtg-gacataatcactcacacttgatttcccaa 23161832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 41341498 - 41341338
Alignment:
Q  3 tcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatccac 101  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||||||||| || ||||||||||||| || ||||| |||||||||||| ||||||||    
T  41341498 tcctccattcctagtc-atgtgggacataatcactcacacttgattacccaataatctccccctcaagtgtgaatcacccacatcactagcctgatccac 41341400  T
Q  102 actaggatcccgctc-----ccccactaagcctaaccacggctctgataccactgttgggaa 158  Q
    |||||||||||||||     ||||||| ||||||||||||||||| ||||||||||| ||||    
T  41341399 actaggatcccgctctcgctccccactgagcctaaccacggctctaataccactgttaggaa 41341338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 14168979 - 14168820
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatcc 99  Q
    |||||||||||||||||||||||| ||||||||| || ||| ||||||| ||||||| |||||||||||||||| ||||  |||||||||||| ||||||    
T  14168979 tttcctccattcctagtcgatgtgggacataatcccttacacttgattatccaacaatctccccctcaagtatgaatcatccacatcactagcatgatcc 14168880  T
Q  100 acactaggatcccgctc-----ccccactaagcctaaccacggctctgataccactgttg 154  Q
    ||||||| |||| | ||     ||||||||||||||||||||||||||||||||||||||    
T  14168879 acactagaatcctgttcccgctccccactaagcctaaccacggctctgataccactgttg 14168820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 41340466 - 41340379
Alignment:
Q  141 tgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    |||||||||||||||| ||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41340466 tgataccactgttggggagtccggggagcctcgggagcggcaatgggc-aaacgtccaagaccataagagacttaaacaccacactctt 41340379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 5963854 - 5963783
Alignment:
Q  158 agtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    |||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  5963854 agtccggggagccccgggagcggcaatgggtcaaacgtccaggaccataagagacttaaacaccacactctt 5963783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 41341634 - 41341555
Alignment:
Q  150 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||| ||| |||||||| || ||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||    
T  41341634 tgttggggagtacggggagccccaggagcggcaatgggccaaacgtccaggactataagagacttaaacaccacattctt 41341555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3294929 - 3294984
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  3294929 tttcctccattcctagtcgatatgggacataatcactcacacttgattacccaaca 3294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5963728 - 5963673
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  5963728 tttcctccattcctagtcgatgtgggacataatcacacacacttgattacccaaca 5963673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 34103733 - 34103654
Alignment:
Q  150 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||| ||||||| |||| ||||||||||||||||| |||| ||| | | |||||||||| |||||||||||||||||    
T  34103733 tgttggggagtccggagagccccgggagcggcaatgggtcaaacgtctaggtccataagagatttaaacaccacactctt 34103654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 41340322 - 41340271
Alignment:
Q  3 tcctccattcctagtcgatgtgagacataatcactcacatttgattacccaa 54  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  41340322 tcctccattcctagtcgatgtgggacataatcactcacacttgattacccaa 41340271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 36389111 - 36389221
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatgatcactcacatcactagcttgatccacact 104  Q
    ||||||| ||||| |||||| ||||| ||||||| || |||||| |||||||||||||||||||||| ||| | | |||||||||||   |||||| |||    
T  36389111 ctccatttctagttgatgtgggacattatcactcgcacttgatt-cccaacaaactccccctcaagtttga-ctcccacatcactaggacgatcca-act 36389207  T
Q  105 aggatcccgctccc 118  Q
    ||||| ||||||||    
T  36389208 aggattccgctccc 36389221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34103599 - 34103542
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaa 58  Q
    ||||||||||| ||| ||||||||  ||||||||||||||| ||||||| ||||||||    
T  34103599 tttcctccatttctattcgatgtggaacataatcactcacacttgattatccaacaaa 34103542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 14169103 - 14169052
Alignment:
Q  141 tgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaa 192  Q
    |||||||||||||||| | |||||||||| || |||||||||||||| ||||    
T  14169103 tgataccactgttggggaatccggggagccccaggagcggcaatgggacaaa 14169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 5981559 - 5981787
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacac 103  Q
    |||||||||||||||||||| |||||||||||||||| |||||| || ||||| ||||||||||||  ||| |||| |||||||||||| ||||||||||    
T  5981559 ctccattcctagtcgatgtgggacataatcactcacacttgatttccaaacaatctccccctcaagcgtgagtcacccacatcactagcctgatccacac 5981658  T
Q  104 taggatcccgctc-----ccccactaagcctaaccacggctctgataccact--gttgggaagtccggggagcgccgggagcggcaatgggccaaatgtc 196  Q
    |||||||||||||     ||||||  |||||||||| || |||||||||| |   | ||| ||||||||||||| || |||||||||||||| |||  ||    
T  5981659 taggatcccgctcccactccccaccgagcctaaccagggttctgataccatttcttgggggagtccggggagcgtcgagagcggcaatgggctaaacttc 5981758  T
Q  197 caagacca-taagagacttaaacaccaca 224  Q
     | ||||| ||||||||||| ||||||||    
T  5981759 aaggaccagtaagagacttagacaccaca 5981787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 2954342 - 2954447
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacac 103  Q
    |||||||||||||||||||| || ||||||||||||| ||||  || |||||| ||||||||||||| ||| |||| |||||||||||||||||||||||    
T  2954342 ctccattcctagtcgatgtgggaaataatcactcacacttgaa-actcaacaatctccccctcaagtgtgagtcacccacatcactagcttgatccacac 2954440  T
Q  104 taggatc 110  Q
    |||||||    
T  2954441 taggatc 2954447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12156771 - 12156826
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  12156771 tttcctccattcctaatcgatgtgggacataatcactcacacttgattacccaaca 12156826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29103327 - 29103367
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcaca 41  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  29103327 tttcctccattcctagtcgatgtgagacatgattactcaca 29103367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14028370 - 14028323
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgatt 48  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||||||    
T  14028370 tttcctctattcctagtcgatgtaggacataatcactcacacttgatt 14028323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 2954625 - 2954666
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttga 46  Q
    |||||||||||||| ||||| |||||||||||||||| ||||    
T  2954625 ctccattcctagtctatgtgggacataatcactcacacttga 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5981846 - 5981894
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgatta 49  Q
    ||||||||||||||| | |||||| ||||||||| |||||| |||||||    
T  5981846 tttcctccattcctaattgatgtgggacataatccctcacacttgatta 5981894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11576082 - 11576034
Alignment:
Q  8 cattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    ||||| ||||||| ||| |||||||| ||||||| ||||||||||||||    
T  11576082 cattcttagtcgacgtgggacataatgactcacacttgattacccaaca 11576034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 31973449 - 31973565
Alignment:
Q  2 ttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcca 100  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||  ||||||| ||||||||||||| ||| ||||||||||||||||  |||||||    
T  31973449 ttcctccatttctagtcggtgtgagacataatcactcacacttgatt-tccaacaatctccccctcaagtgtgactcactcacatcactagtctgatcca 31973547  T
Q  101 cactaggatcccgctccc 118  Q
    ||||||||||||||||||    
T  31973548 cactaggatcccgctccc 31973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 43834540 - 43834350
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    |||| ||||||| ||| |||||||||| ||||||||||||| ||||  ||||||||| |||| |||||||| ||| ||||||||||||||||| ||||||    
T  43834540 tttcatccattcttagccgatgtgagatataatcactcacacttgaa-acccaacaatctccacctcaagtgtgagtcactcacatcactagcctgatcc 43834442  T
Q  100 acactaggatc------ccgctcccccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaat 184  Q
    |||||||||||      |||||||||||    ||||||||| || ||||||||||  ||||||| |||  ||||||||||||||||| ||||    
T  43834441 acactaggatcccacttccgctcccccatcgggcctaaccagggttctgataccagttgttggggagttaggggagcgccgggagcgacaat 43834350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4392023 - 4392245
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatgatcactcacatcactagcttgatcca 100  Q
    ||||||||||||||| |||||||| |||||||||||| ||| |||||| |||||||| ||  ||||||||       || |||||||||||| |||||||    
T  4392023 tttcctccattcctactcgatgtgggacataatcacttacagttgatttcccaacaatctttccctcaag-------acccacatcactagcctgatcca 4392115  T
Q  101 cactaggatcccgctc-----ccccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaatg 194  Q
    |||||||||||  |||     ||||||  |||||||||  |||||||| | ||  ||||||| ||| ||||||||| | | |||||||||||| |||| |    
T  4392116 cactaggatccaactcctgctccccaccgagcctaacccgggctctgacatcagttgttggggagttcggggagcgtcagaagcggcaatgggtcaaacg 4392215  T
Q  195 tccaagaccataagagacttaaacaccaca 224  Q
    || | |||||||||  ||||| ||||||||    
T  4392216 tcaaggaccataagtcacttatacaccaca 4392245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34665922 - 34666039
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatgatc-actcacatcactagcttgatcc 99  Q
    ||||||| ||| |||||||||||| || |||||||||||||  ||||| || ||||| ||| ||||||||| ||||  ||||||||||||||  ||||||    
T  34665922 tttcctcaatttctagtcgatgtgggatataatcactcacacatgatttcc-aacaatctctccctcaagtgtgatttactcacatcactagtgtgatcc 34666020  T
Q  100 acactaggatcccgctccc 118  Q
    |||||||||||||||||||    
T  34666021 acactaggatcccgctccc 34666039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15327901 - 15327846
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  15327901 tttcctccattcctagtcgatgtgagacataatcactcacacttgatttcccaaca 15327846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4392305 - 4392360
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  4392305 tttcctccattcatagtcgatgtgagacataatcactcacacttgatttcccaaca 4392360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 25293562 - 25293643
Alignment:
Q  148 actgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||||| |||||| ||||| ||| ||||||||||||| ||||  | || ||||||||||||||| ||||||||||||||    
T  25293562 actgttggggagtccgaggagccccgagagcggcaatgggtcaaacatacaggaccataagagacttgaacaccacactctt 25293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25294900 - 25294956
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaa 57  Q
    |||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||    
T  25294900 tttcctccattcctagccaatgtgggacataatcactcacacttgattacccaacaa 25294956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 27686529 - 27686582
Alignment:
Q  177 gcggcaatgggccaaatgtccaagacca-taagagacttaaacaccacactctt 229  Q
    |||||||||| | ||||||||||||||| ||||||||||| |||||||||||||    
T  27686529 gcggcaatggactaaatgtccaagaccaataagagacttagacaccacactctt 27686582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27686637 - 27686677
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcaca 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  27686637 tttcctccattcctagtcgatgtggaacataatcactcaca 27686677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 25294960 - 25294997
Alignment:
Q  17 tcgatgtgagacataatcactcacatttgattacccaa 54  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  25294960 tcgatgtgggacataatcactcacaattgattacccaa 25294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 47680933 - 47680726
Alignment:
Q  26 gacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactagga------tcccgctccc 118  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||| ||| |||| |||||||||||| |||||| ||||||||      ||||||||||    
T  47680933 gacataatcactcacacttgatttcccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatcctcactaggatcccactcccgctccc 47680834  T
Q  119 ccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagacc-ataagagacttaa 216  Q
    ||||| |||||||||| |||||||||||||  |||||||  ||| | |||||  |||||||| ||||| |  ||| ||||| |||| ||||||||||||     
T  47680833 ccactgagcctaaccagggctctgataccagttgttggggtgtctgaggagcatcgggagcgacaatgagttaaacgtccaggaccaataagagacttag 47680734  T
Q  217 acaccaca 224  Q
    ||||||||    
T  47680733 acaccaca 47680726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 10396461 - 10396330
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||||||| |||||| || ||||||||||||||||||| |||||| || ||||| ||||||||||||||||| || | |||||||||||  ||||||    
T  10396461 tttcctccatttctagtcaatatgagacataatcactcacacttgatttcc-aacaatctccccctcaagtatgactcgcccacatcactaggatgatcc 10396363  T
Q  100 acactaggatcccgctcccccactaagcctaac 132  Q
    ||||||||||||| ||||||||  |||||||||    
T  10396362 acactaggatcccactcccccagaaagcctaac 10396330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 47681204 - 47681051
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatg---atcactcacatcactagcttgat 97  Q
    ||||||||||| ||| |||||| | |||||||||||||||| || ||| |||||||| ||||||||||||| ||    |||| |||||||||||| ||||    
T  47681204 tttcctccatttctaatcgatgcgggacataatcactcacactttatttcccaacaatctccccctcaagtgtgttagtcacccacatcactagcctgat 47681105  T
Q  98 ccacactagga------tcccgctcccccactaagcctaaccacggctctgata 145  Q
    || ||||||||      ||||||||||||||| |||||||| | ||||||||||    
T  47681104 cctcactaggatcccactcccgctcccccactgagcctaactagggctctgata 47681051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 51681583 - 51681355
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||| |||||||||| ||||| |||||||||||| ||| ||||  ||||| ||| ||  ||||||||| ||| |||| ||||||||| || ||||||    
T  51681583 tttcctcaattcctagtcaatgtgggacataatcacttacacttga-aacccagcaatctttccctcaagtgtgagtcacccacatcactggcctgatcc 51681485  T
Q  100 acactaggatcccgct----cccccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaatg 194  Q
    ||| ||||||| | ||    |||||||| |||||||| |  ||||||||| ||  ||||||| ||| ||||||||  || ||||||||||||| ||||||    
T  51681484 acattaggatctcactcccgcccccactgagcctaacgagagctctgatatcagttgttggggagt-cggggagcttcgagagcggcaatgggtcaaatg 51681386  T
Q  195 tccaagacc-ataagagacttaaacaccaca 224  Q
    | || ||||  ||||||||||| ||||||||    
T  51681385 ttcaggacctgtaagagacttagacaccaca 51681355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1868096 - 1868039
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaa 58  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||    
T  1868096 tttcctccattcttagtcgatgtgggacataatcactcacacttgattacccgacaaa 1868039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11197271 - 11197154
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||| ||    ||||| |||||  |||||| | | |||| |||||||||||  ||||||    
T  11197271 tttcctccatttctagtcgatgtgaggcataatcactcacacttggtt-tttaacaatctcccaatcaagtgttactcacccacatcactaggatgatcc 11197173  T
Q  100 acactaggatcccgctccc 118  Q
    |||| ||||||||||||||    
T  11197172 acaccaggatcccgctccc 11197154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 26473480 - 26473655
Alignment:
Q  59 ctccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc-------ccactaagcctaaccacggctctgataccact 150  Q
    ||||||||||| | ||| |||| ||||||||| || ||||||| || ||||||||||||||       ||||  ||| |||||| ||||||||||||| |    
T  26473480 ctccccctcaattgtgagtcacccacatcacttgcctgatccagacaaggatcccgctcccgctccccccaccgagcttaaccaaggctctgataccaat 26473579  T
Q  151 -gttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagacc--ataagagacttaaacaccac 223  Q
     | |||| ||| |||||||||||||||| | |||||||| ||| ||||| ||||  |||||||||||| |||||||    
T  26473580 tgctggggagttcggggagcgccgggagtgccaatgggctaaacgtccaggaccctataagagacttagacaccac 26473655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 51681290 - 51681187
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacac 103  Q
    ||||||||||||||||||  |||||||||||| |||| |||||| |||||||| |||   || |||| ||| |||| |||||||||||| ||||||||||    
T  51681290 ctccattcctagtcgatg--agacataatcacccacacttgatttcccaacaatctctaacttaagtgtgagtcacccacatcactagcctgatccacac 51681193  T
Q  104 taggat 109  Q
     |||||    
T  51681192 aaggat 51681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10396176 - 10396129
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgatt 48  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||    
T  10396176 tttcctccatttcttgtcgatgtgagacataatcactcacacttgatt 10396129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 47680390 - 47680316
Alignment:
Q  26 gacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    |||||||||||||||| |||||| |||||||| ||||||||||| | ||| |||| ||||||| |||| ||||||    
T  47680390 gacataatcactcacacttgatttcccaacaatctccccctcaactgtgagtcacccacatcattagcctgatcc 47680316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 8445883 - 8445743
Alignment:
Q  18 cgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatgat-cactcacatcactagcttgatccacactaggatcccgctc 116  Q
    ||||||| |||||||||||| | | ||||  ||||||||| ||||||||||||| |||| ||| ||||||||||      |||||||||||||||| |||    
T  8445883 cgatgtgggacataatcacttagacttgaa-acccaacaatctccccctcaagtgtgattcacccacatcacta------tccacactaggatcccactc 8445791  T
Q  117 cc------ccactaagcctaaccacggctctgataccactgttgggaa 158  Q
    ||      ||||  |||||||||| |||||||||||||||||| ||||    
T  8445790 ccgctaccccaccgagcctaaccagggctctgataccactgttaggaa 8445743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11307692 - 11307796
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    |||||||||||  |||||||||||||||| ||||||||||| || |||  |  |||| || |||||||| | ||| |||  |||||||||||||||||||    
T  11307692 tttcctccatttatagtcgatgtgagacacaatcactcacacttaatt-tctgacaatcttcccctcaaatgtgagtcatccacatcactagcttgatcc 11307790  T
Q  100 acacta 105  Q
    ||||||    
T  11307791 acacta 11307796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 34946228 - 34946335
Alignment:
Q  5 ctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacac 103  Q
    ||||||| | ||| |||||| ||||| |||||||||| |||||| || ||||| ||||| ||||||| ||| |||| |||||||||||  ||||||| ||    
T  34946228 ctccatttcaagttgatgtgggacattatcactcacacttgatttcc-aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaac 34946326  T
Q  104 taggatccc 112  Q
    || ||||||    
T  34946327 tatgatccc 34946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 47680666 - 47680575
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactag 91  Q
    |||||||||||  || |||||||| |||||||||||||||| || |||  ||||||| || |||||||||| ||| |||| || ||||||||    
T  47680666 tttcctccatttataatcgatgtgggacataatcactcacacttaattttccaacaatcttcccctcaagtgtgagtcacccatatcactag 47680575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 1868204 - 1868151
Alignment:
Q  176 agcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||  ||||||||    
T  1868204 agcggcaatgggccaaacgtccaggatcataagagacttaatcataacactctt 1868151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 22605164 - 22605313
Alignment:
Q  75 atcactcacatcactagcttgatccacactaggatcccgctccc-----ccactaagcctaaccacggctctgataccactgttgggaagtccggggagc 169  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||     ||||| ||||||||||||||| |||||||| |||||||         ||||    
T  22605164 atcacccacatcactagcctgatc-acactaggatcccgctcccgctccccactgagcctaaccacggctttgataccattgttggg---------gagc 22605253  T
Q  170 gccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  22605254 cccgggagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacattctt 22605313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 9362819 - 9362905
Alignment:
Q  136 ggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacacca 222  Q
    |||||| ||||||| |||||| ||||| |||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  9362819 ggctctcataccaccgttggggagtccagggagccccgggagcggcaatgggacaaacgtccaggaccataagagacttaaacacca 9362905  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 21118867 - 21118966
Alignment:
Q  117 ccccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgc-cgggagcggcaatgggccaaatgtccaagaccataagagactta 215  Q
    |||||||||||||||||||| ||||||||||||||||||| | | |||||||| |  |||||||||||||||||| | ||||| ||| ||||||||||||    
T  21118867 ccccactaagcctaaccacgactctgataccactgttggggacttcggggagccctggggagcggcaatgggccagacgtccaggactataagagactta 21118966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 22604999 - 22605078
Alignment:
Q  150 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    ||||||| || ||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  22604999 tgttggggagcccggggagccccagaagcggcaatgggccaaatgtccaagaccataagagagttaaacacctcactctt 22605078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21130170 - 21130225
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaaca 56  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  21130170 tttcctccattcctagtcgatgtgggacataatcactcacacttgattacccaaca 21130225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7301413 - 7301530
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||||||| |||||||||||| |||||||||||||||| || |||   ||||||  ||| |||||| | ||| |||| |||||||||||| ||||||    
T  7301413 tttcctccatttctagtcgatgtgggacataatcactcacacttaatt-ttcaacaatatcctcctcaactgtgactcacccacatcactagcctgatcc 7301511  T
Q  100 acactaggatcccgctccc 118  Q
    ||| |||||||||||||||    
T  7301512 acattaggatcccgctccc 7301530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22605368 - 22605421
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaa 54  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  22605368 tttcctccattcctagtcgatgtggaacataatcactcacacttgattacccaa 22605421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 22612177 - 22612291
Alignment:
Q  112 cgctcccccactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaag-accataaga 209  Q
    |||||||||||| |||||||||| |||||| ||||||  ||||||  |||  ||| |||||||||| |  |||||||| ||| ||||||| ||| |||||    
T  22612177 cgctcccccactgagcctaaccagggctcttataccagttgttggcgagtatgggaagcgccgggatcaacaatgggctaaacgtccaagaaccctaaga 22612276  T
Q  210 gacttaaacaccaca 224  Q
    |||||| ||||||||    
T  22612277 gacttagacaccaca 22612291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 21297251 - 21297293
Alignment:
Q  6 tccattcctagtcgatgtgagacataatcactcacatttgatt 48  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||    
T  21297251 tccattcctagtcgatgtgggacacaatcactcacacttgatt 21297293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22605133 - 22605174
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacat 42  Q
    |||||||| ||||||||||||||| ||||||||||| |||||    
T  22605133 tttcctccgttcctagtcgatgtgggacataatcacccacat 22605174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 197878 - 197827
Alignment:
Q  178 cggcaatgggccaaatgtccaagaccataagagacttaaacaccacactctt 229  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  197878 cggcaatgagccaaacgtccaggaccataagagacttaaacaccacactctt 197827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40053499 - 40053267
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaa--ctccccctcaagtatga-tcactcacatcactagcttgat 97  Q
    |||||||||||  ||| ||||||| |||||||| | ||||| |||||| ||||||||   | ||||||||||| ||| |||| |||||||||||| ||||    
T  40053499 tttcctccatttttagccgatgtgggacataattattcacacttgatt-cccaacaatagccccccctcaagtgtgagtcacccacatcactagcctgat 40053401  T
Q  98 ccacactaggatcccgct-----cccccactaagcctaaccacggctctgatacc-actgttgggaagtccggggagcgccgggagcggcaatgggccaa 191  Q
    |||  |||||||||| ||      |||||   |||||||  | |||||||||||| | ||| ||| ||||| ||||||| |||||||||||||| || ||    
T  40053400 ccaggctaggatcccacttccgctccccatcgagcctaatgagggctctgataccaattgtaggggagtcctgggagcgacgggagcggcaatgagctaa 40053301  T
Q  192 atgtccaagacca-taagagacttaaacaccaca 224  Q
    | || ||||||||  |||||||||| || |||||    
T  40053300 acgttcaagaccaccaagagacttagacgccaca 40053267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13792607 - 13792654
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgatt 48  Q
    ||||||||||| ||||| |||||| |||||||||||||||| ||||||    
T  13792607 tttcctccatttctagttgatgtgggacataatcactcacacttgatt 13792654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 44981933 - 44981987
Alignment:
Q  60 tccccctcaagtatga-tcactcacatcactagc-ttgatccacactaggatccc 112  Q
    |||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||    
T  44981933 tccccctcaagtgtgagtcacccacatcactagccttgatccacactaggatccc 44981987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 11727640 - 11727697
Alignment:
Q  166 gagcgccgggagcggcaatgggccaaatgtccaagacca-taagagacttaaacacca 222  Q
    |||||||||||||||||||| || ||||||| || |||| ||||||||||| ||||||    
T  11727640 gagcgccgggagcggcaatgagctaaatgtctaaaaccactaagagacttagacacca 11727697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19548189 - 19548086
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    ||||||| ||| |||||||||||| ||||||| |||||||  ||||  ||||||||| | || |||||||| ||| |||| |||||||||||| ||||||    
T  19548189 tttcctctatttctagtcgatgtgggacataaccactcacgcttga-aacccaacaatc-cctcctcaagtgtgagtcacccacatcactagcctgatcc 19548092  T
Q  100 acacta 105  Q
    | ||||    
T  19548091 aaacta 19548086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4182 - 4286
Alignment:
Q  1 tttcctccattcctagtcgatgtgagacataatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 99  Q
    |||||||||||  |||||||||||||||| ||||||||||| || |||  |  |||| || |||||||| | ||| |||  |||||||||||||||||||    
T  4182 tttcctccatttatagtcgatgtgagacacaatcactcacacttaatt-tctgacaatcttcccctcaaatgtgagtcatccacatcactagcttgatcc 4280  T
Q  100 acacta 105  Q
    ||||||    
T  4281 acacta 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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