View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8481_low_17 (Length: 226)

Name: NF8481_low_17
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8481_low_17
NF8481_low_17
[»] chr2 (4 HSPs)
chr2 (3-208)||(11835034-11835239)
chr2 (3-208)||(11821125-11821330)
chr2 (3-200)||(11933661-11933858)
chr2 (3-200)||(11946882-11947079)
[»] chr4 (4 HSPs)
chr4 (3-196)||(38125452-38125645)
chr4 (54-193)||(38129408-38129547)
chr4 (3-187)||(38090627-38090811)
chr4 (3-108)||(36107962-36108067)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 11835034 - 11835239
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  11835034 gcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatatt 11835133  T
Q  103 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcaga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11835134 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcaga 11835233  T
Q  203 aattct 208  Q
    ||||||    
T  11835234 aattct 11835239  T

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Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 11821330 - 11821125
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  11821330 gcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatatt 11821231  T
Q  103 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcaga 202  Q
    ||| |||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |    
T  11821230 ttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccgacagttggacacacaccagcaggaaaaccatgaaccttactcttctcata 11821131  T
Q  203 aattct 208  Q
    ||||||    
T  11821130 aattct 11821125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 11933858 - 11933661
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| |||||||||||| ||||||||||| ||||  |  |  || || |||||||| |  ||||  ||||| |||||||||||||| || | ||||||||    
T  11933858 gcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtgcatcgataatattatcaactgaaagaccatatt 11933759  T
Q  103 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttca 200  Q
    |||||| |||   |||||| || |||||||| |  || || |||||||| || || ||||| || || || ||||| |||||||||||||| ||||||    
T  11933758 ttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttca 11933661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 11947079 - 11946882
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| |||||||||||| ||||||||||| ||||  |  |  || || |||||||| |  ||||  ||||| |||||||||||||| || | ||||||||    
T  11947079 gcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtgcatcgataatattatcaactgaaagaccatatt 11946980  T
Q  103 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttca 200  Q
    |||||| |||   |||||| || |||||||| |  || || |||||||| || || ||||| || || || ||||| |||||||||||||| ||||||    
T  11946979 ttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttca 11946882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 38125645 - 38125452
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| |||||| ||||||||||||||||||||||  | || ||| || |||||||||| |||||||||||||| || ||||||||  || || ||| |||    
T  38125645 gcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcatcaacaacattatcaatagacaacccaaatt 38125546  T
Q  103 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactctt 196  Q
    |||||| |||   |||||||||||||||||| | ||||||||||||||| |||||   ||| || ||||||||||| |||||||||||||||||    
T  38125545 ttctcatcatgttaccataccctccaccactcaagtgaccaccaacaccaacagtaatacaaaccccagcaggaaagccatgaactttactctt 38125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 38129547 - 38129408
Alignment:
Q  54 acatcaaaaatttcagcatcaataatattatcaacggataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccga 153  Q
    ||||||| ||||| |||||||| |||||||||||  ||||| ||  ||||||||| |||   |||||||||||| ||||| |  || ||||||||||| |    
T  38129547 acatcaataattttagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaa 38129448  T
Q  154 cagttggacacacaccagcaggaaatccatgaactttact 193  Q
    |||||||||| || || |||||||| ||||||||||||||    
T  38129447 cagttggacaaacgccggcaggaaagccatgaactttact 38129408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 38090811 - 38090627
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| ||||| |||||| |||||||||| |||||  |  |  ||||| | |||||||| ||| | |||||| | |||||||||||| ||||| ||| |||    
T  38090811 gcccaaaaaacatcttcccccattgattccctatcaagcactcttccatcaacatcaacaatcttagcatccaaaatattatcaacagataacccaaatt 38090712  T
Q  103 ttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaac 187  Q
    |||||| |||   ||||||||| |||||||| |  || ||||||||||| ||||| ||||| || ||||| ||||| ||||||||    
T  38090711 ttctcatcatgttaccataccccccaccactaaaatgtccaccaacaccaacagtaggacaaaccccagctggaaaaccatgaac 38090627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 36108067 - 36107962
Alignment:
Q  3 gcccgaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatatt 102  Q
    |||| |||||||||||| ||||||||||| ||||  | ||   | |||||||||||||  ||||  |||||||||||||||||||| || | |||| |||    
T  36108067 gcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaaccatttttgcatcaataatattatcaacagaaagaccaaatt 36107968  T
Q  103 ttctca 108  Q
    ||||||    
T  36107967 ttctca 36107962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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