View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_low_2 (Length: 793)
Name: NF8481_low_2
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Complemental strand, 42939214 - 42938691
Alignment:
| Q |
18 |
catacagaagagagtttgaagagtgagacaaattttttagcaaatgaatttaacattggtggcaaactggcaatatatagtaataaagtagtcaaaatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42939214 |
catacagaagagagtttgaagagtgagacaaattttttagcaaatgaatttaacattggtggcaaactggcaatatatagtaataaagtagtcaaaatgt |
42939115 |
T |
|
| Q |
118 |
ttttgaatcaacatcaaagataatagaagaagaaagggtggccagaccttgagagagaaagtatgattgcaaaagtaaga---------gtaaattgatg |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42939114 |
ttttgaatcaacatcaaagataatagaagatgaaagggtggccaggccttgagagagaaagtatgattgcaaaagtaagcagaaacatggtaaattgatg |
42939015 |
T |
|
| Q |
209 |
ggattatctatatctaagtgagtcaagaattgatttttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaattggtgaaata |
308 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42939014 |
ggattat----agctaagtgagtcaagaattgatttttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaa--ggtgaaata |
42938921 |
T |
|
| Q |
309 |
ccaacaataacagagaagtaatgaattttgagtaaatgatattttaatttgtaacagctagctatattatattataactcaaatga--cacatgaatagt |
406 |
Q |
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| T |
42938920 |
ccaacaataacagagaagtaatgaattttgagtaaatgatattttaatttgtatcagcta----tattatattataactcaaatgagacacatgaatagt |
42938825 |
T |
|
| Q |
407 |
agtgaataatattgaatgcaagaaaaatgtgttcacttaagagtatgggagagtcctcttaaaggtgtcacattagaatatttatgacctggttcaccga |
506 |
Q |
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| T |
42938824 |
agtgaataatattgaatgcaa---aaatgtgttcacataagagaatgggagagtcctcttaaaggtgtcacattagaatatttatgacctggttcaccga |
42938728 |
T |
|
| Q |
507 |
caattcttttttaagctcataataatgaattagatta |
543 |
Q |
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| T |
42938727 |
caattcttttttaagctcataataatgaattagatta |
42938691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 542 - 778
Target Start/End: Complemental strand, 42937715 - 42937489
Alignment:
| Q |
542 |
tagatgctactatttgtctgcaaataaccatctttgaaggaaaaaattgagagtttgtgaatgcctccaaagtctccaactaaaataaataaataaatca |
641 |
Q |
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| T |
42937715 |
tagatgctactatttgtctgcaa-taaccatctttgaaggaaaaaattgag--tttgtgaatgcctccaaagtctacaactaaaataaataaataaatca |
42937619 |
T |
|
| Q |
642 |
aactagaccaaacaagaattttactatgcaaacatgtacaattattataggagattaggatttgctgcattaagcaaatccacattcacacagaaatgtc |
741 |
Q |
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| T |
42937618 |
aactagaccatacaagaattttactatgcaaacatgtacaattattataggagattaggatttgct-------gcaaatccacattcacacagaaatgtc |
42937526 |
T |
|
| Q |
742 |
aaacttaaaactaggtccgttcgatttcgatctgatg |
778 |
Q |
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| T |
42937525 |
aaacttaaaactaggtccgttcgatttcgatctgatg |
42937489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 426
Target Start/End: Complemental strand, 27464182 - 27463974
Alignment:
| Q |
217 |
tatatctaagtgagtcaagaattgatttttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaattggtgaaataccaacaat |
316 |
Q |
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|||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||| |
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| T |
27464182 |
tatatctaagtgagccaagaatgaatttctataagatgcatcaaattaaattaatgtgttttgcattgctaaagaaataaa--ggtgaaataccaataat |
27464085 |
T |
|
| Q |
317 |
aaca-----gagaagtaatgaattttgagtaaatgatattttaatttgtaacagctagctatattatattataactcaaatgacacatgaatagtagtga |
411 |
Q |
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||| |||||| |||||||||||||||||| ||| ||||||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
27464084 |
gacattgacgagaagcaatgaattttgagtaaataatactttaatttgcaac----ggctatattatattgtaactcaaatgacaaatgactagtagtga |
27463989 |
T |
|
| Q |
412 |
ataatattgaatgca |
426 |
Q |
| |
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||| ||||| ||||| |
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| T |
27463988 |
atactattggatgca |
27463974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 27484336 - 27484267
Alignment:
| Q |
370 |
ctatattatattataactcaaatgacacatgaatagtagtgaataatattgaatgcaagaaaaatgtgttcac |
442 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||| |
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| T |
27484336 |
ctatattatatcgtaactcaaatgacacatgaatattagtgaatactattggatgc---aaaaatgtgttcac |
27484267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 9330855 - 9330798
Alignment:
| Q |
25 |
aagagagtttgaagagtgagacaaattttttagcaaatgaatttaacattggtggcaa |
82 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9330855 |
aagagagtttgaggagtgagacaatttttttagcaaatgaatttaacattggtggcaa |
9330798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 9350503 - 9350447
Alignment:
| Q |
26 |
agagagtttgaagagtgagacaaattttttagcaaatgaatttaacattggtggcaa |
82 |
Q |
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||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
9350503 |
agagagtttgaggtgtgagacaaattatttagcaaataaatttaacattggtggcaa |
9350447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 9350302 - 9350232
Alignment:
| Q |
217 |
tatatctaagtgagtcaagaattgatttttataagatgcatcaaattatgttaatgtgttttgcattgcta |
287 |
Q |
| |
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|||||||||||||| ||| || | || |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
9350302 |
tatatctaagtgagctaaggatgaaattctatacgatgcatcaaattatgttaacgtgttttgcattgcta |
9350232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 9330796 - 9330749
Alignment:
| Q |
100 |
ataaagtagtcaaaatgtttttgaatcaacatcaaagataatagaaga |
147 |
Q |
| |
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||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
9330796 |
ataaagtagccaaaagatttttggatcaacatcaaagataatagaaga |
9330749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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