View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_low_4 (Length: 510)
Name: NF8481_low_4
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 195 - 496
Target Start/End: Original strand, 9863596 - 9863897
Alignment:
| Q |
195 |
aatatataaaaaagctagtttcttttgtatatgaatactttttgtattggcaatatcannnnnnnngtaatcaaactttatattgattttgaaagttttt |
294 |
Q |
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| T |
9863596 |
aatatataaaaaagctagtttcttttgtatatgaatactttttgtattggcaatatcattttttttgtaatcaaactttatattgattttgaaagttttt |
9863695 |
T |
|
| Q |
295 |
acaaattggcgaatggccatattgtttaagccacgtgaattttttcaacaatttaatgacatatatataagtatgtagtgaattagtgatagggatgaaa |
394 |
Q |
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| T |
9863696 |
acaaattggcgaatggccatattgtttaagccacgtgaattttttcaacaatttaatgacatatatataagtatgtagtgaattagtgatagggatgaaa |
9863795 |
T |
|
| Q |
395 |
cgttacatttgtgatgtatccatgttttacggttcattgctttccacacagtgtatgtctcaaagatccactatcatatcaccttgtatgtctttgatgt |
494 |
Q |
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| T |
9863796 |
cgttacatttgcgatgtatccatgttttacggttcattgctttccacacagtgtatgtctcaaagatccactatcatatcaccttgtatgtctttgatgt |
9863895 |
T |
|
| Q |
495 |
cc |
496 |
Q |
| |
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|| |
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| T |
9863896 |
cc |
9863897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 9863435 - 9863535
Alignment:
| Q |
35 |
gaacaagattactaggatttgataatgaattgtcatatgtactt-tctttatatttgaattgtcattcgttactgtctattaggatttggatataaaaca |
133 |
Q |
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| T |
9863435 |
gaacaagattactaggatttgagaatgaattatcatatgtgcttatctttatatttgaattgtcattcgttactgtctattaggatttggatataaaaca |
9863534 |
T |
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| Q |
134 |
g |
134 |
Q |
| |
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| T |
9863535 |
g |
9863535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 16090247 - 16090193
Alignment:
| Q |
390 |
tgaaacgttacatttgtgatgtatccatgttttacggttcattgctttccacaca |
444 |
Q |
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| T |
16090247 |
tgaatcgttacatttgtgatgtatccatgttttacagtttattgctttccacaca |
16090193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 16090548 - 16090465
Alignment:
| Q |
50 |
gatttgataatgaattgtcatatgtactt-tctttatatttgaattgtcattcgttactgtctattaggatttggatataaaac |
132 |
Q |
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| T |
16090548 |
gatttgagaatgaattatcatatatgcctatctttttatttcaattgtcattcgttactgtctactaagatttggatataaaac |
16090465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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