View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_low_7 (Length: 427)
Name: NF8481_low_7
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 125 - 411
Target Start/End: Original strand, 32975272 - 32975563
Alignment:
| Q |
125 |
ttgtattcataagaattcgtaagccaatcttcttctcgttggtatcttcggtatcgctgttcctgttctcgtctacaaaggcatcgtcaaagaatttgta |
224 |
Q |
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| T |
32975272 |
ttgtattcataagaattcgtaagccaatcttcttctcgttggtatcttcggtatcgcttttcctgttctcgtctacaaaggcatcgtcaaagaattcgta |
32975371 |
T |
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| Q |
225 |
agctacttccattgattgatttatccacaattctgaatttctgattagttaaatttaggaatttaaggttctatgtgattgtgaa-----tgctttgaat |
319 |
Q |
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| T |
32975372 |
agccacttccattgattgatttatccacaattctgaatttctcattagttgaatttaggaatttaaggttctatgtgattgtgaatgctttgctttgaat |
32975471 |
T |
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| Q |
320 |
tggacaaagtttcttactttttatgtgggtaattttattttgagtgaagttggattttttccagcttttgggtatatgggccagcttggaat |
411 |
Q |
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| T |
32975472 |
tggacaaagtttcttactttttatgtgggtaattttattttgagtgaagttggattttttccagcttttgggtatatgggccagcttggaat |
32975563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 32975161 - 32975217
Alignment:
| Q |
13 |
tccctcactcagtgttctcatctgatcatcgctacctctctgcttcacttttgtaag |
69 |
Q |
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| T |
32975161 |
tccctcactcagtgctctcatctgatcatcgcgtcctctctgcttcacttttgtaag |
32975217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 45280323 - 45280367
Alignment:
| Q |
177 |
atcgctgttcctgttctcgtctacaaaggcatcgtcaaagaattt |
221 |
Q |
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| T |
45280323 |
atcgttgttcctgttctcgtctacaaaggcatcgtcagagaattt |
45280367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 35071816 - 35071728
Alignment:
| Q |
149 |
caatcttcttctcgttggtatcttcggtatcgctgttcctgttctcgtctacaaaggcatcgtcaaagaatttgtaagctacttccatt |
237 |
Q |
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| T |
35071816 |
caatcttcttctcgttggtatcttcggtatcgctcttcctgttctcgtctacaaaggcatcgtcaaagaattcgtaagccacttccatt |
35071728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 6029360 - 6029404
Alignment:
| Q |
177 |
atcgctgttcctgttctcgtctacaaaggcatcgtcaaagaattt |
221 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
6029360 |
atcgttgttcctgttctcgtctagaaaggcatcgtcaaagaattt |
6029404 |
T |
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