View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8481_low_9 (Length: 395)
Name: NF8481_low_9
Description: NF8481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8481_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 37 - 395
Target Start/End: Original strand, 9244975 - 9245333
Alignment:
| Q |
37 |
atatatgttggttttatgtaagctatatactaaattgatgaaaagataattgaattgaaaagtagatatataaatttaacttatgagaaaaatggtagga |
136 |
Q |
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| T |
9244975 |
atatatattggttttatgtaagctatatactaaattgatgaaaagataattgaattgaaaagtagatatataaatttaacttatgagaaaaatggtagga |
9245074 |
T |
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| Q |
137 |
ttgatttatttgtatttgtcaataaaaatatgtacaatggatattttttggcagaggtagtatggtactagccaaaacatcatatactacaaatatagcc |
236 |
Q |
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| T |
9245075 |
ttgatttatttgtatttgtcaataaaaatatgtacaatggatatattttggcagaggtagtatggtactagccaaaacatcatatactacaaatgtagcc |
9245174 |
T |
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| Q |
237 |
ctaattgttgtattcggctattctaccattgtattcgagttagtttccgttgataggaccggcccaatatatcaagaggtttaaaacaaattttataatg |
336 |
Q |
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| T |
9245175 |
ctaattgttgtattcggctattctaccatggtattcgagttagtttccgttgataggaccggcccaacatatcaagaggtttaaaacaaattttataatg |
9245274 |
T |
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| Q |
337 |
aagcgttttggaattaaaccttgggtcggtcctcatgggtgtacgtgaggtctcatatt |
395 |
Q |
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| T |
9245275 |
aagcgttttggaattaaaccttaggtcggtcctcatggatgtacgtgaggtctcatatt |
9245333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 9862252 - 9862196
Alignment:
| Q |
295 |
ccggcccaatatatcaagaggtttaaaacaaattttataatgaagcgttttggaatt |
351 |
Q |
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| T |
9862252 |
ccggcccaacatgtcaagaggcttaaagcaaattttataatgaagccttttggaatt |
9862196 |
T |
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